Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   P3X63_RS13340 Genome accession   NZ_CP120679
Coordinates   2588455..2589255 (-) Length   266 a.a.
NCBI ID   WP_277691008.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2583455..2594255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS13315 (P3X63_13315) - 2584991..2585236 (+) 246 WP_026587794.1 DUF2627 domain-containing protein -
  P3X63_RS13320 (P3X63_13320) - 2585273..2586001 (-) 729 WP_277691005.1 glycerophosphodiester phosphodiesterase -
  P3X63_RS13325 (P3X63_13325) - 2586154..2586774 (-) 621 WP_035428363.1 N-acetylmuramoyl-L-alanine amidase -
  P3X63_RS13330 (P3X63_13330) - 2586810..2587118 (-) 309 WP_026587797.1 hypothetical protein -
  P3X63_RS13335 (P3X63_13335) - 2587540..2588088 (-) 549 WP_026587798.1 serine acetyltransferase -
  P3X63_RS13340 (P3X63_13340) spo0A 2588455..2589255 (-) 801 WP_277691008.1 sporulation transcription factor Spo0A Regulator
  P3X63_RS13345 (P3X63_13345) spoIVB 2589546..2590829 (-) 1284 WP_026587800.1 SpoIVB peptidase -
  P3X63_RS13350 (P3X63_13350) recN 2591010..2592740 (-) 1731 WP_026587801.1 DNA repair protein RecN Machinery gene
  P3X63_RS13355 (P3X63_13355) argR 2592770..2593219 (-) 450 WP_026587802.1 transcriptional regulator ArgR -
  P3X63_RS13360 (P3X63_13360) - 2593326..2594171 (-) 846 WP_026587803.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29596.14 Da        Isoelectric Point: 6.6109

>NTDB_id=807665 P3X63_RS13340 WP_277691008.1 2588455..2589255(-) (spo0A) [Bacillus sp. HSf4]
MEKIKVCVADDNRELVGLLSEYIEGQNDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDVSITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=807665 P3X63_RS13340 WP_277691008.1 2588455..2589255(-) (spo0A) [Bacillus sp. HSf4]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGAGAACTTGTCGGACTGTTAAGCGAATATATTGAGGGGCAAAA
CGACATGGAAGTGCTCGGTGTGGCTTATAACGGGCAGGAATGTCTTTCTTTGTTTAAAGACAAGGAGCCCGACGTGCTCG
TTCTTGATATTATCATGCCTCATCTTGACGGCCTGGCTGTGCTTGAAAGGCTGAGGGAGTCACAGCTCAAAAAACAGCCG
AATGTCATTATGCTGACGGCGTTCGGACAGGAAGACGTGACGAAAAAAGCTGTTGATTTAGGCGCGTCATATTTTATCCT
AAAGCCGTTTGATATGGAGAATCTGGTCGGCCATATCCGCCAGGTCAGCGGAAATGGTTCACAATTGACGCACCGCGCGC
CGTCTTCGCAAAGCAGCGTGCTTCGTCCGCAGCCTGAATCGCCGAAGAAAAACCTCGATGTCAGCATCACGACGATCATC
CATGAAATCGGTGTTCCCGCTCATATAAAAGGATATTTATACTTACGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTTTTAGGCAGCATCACAAAAGTGCTGTATCCAGATATCGCTAAAAAATTCAACACAACGGCAAGCCGAGTCGAACGGG
CCATCCGCCACGCGATCGAAGTCGCATGGAGCAGAGGCAACATCGATTCGATCTCATCGCTGTTCGGCTACACGGTCAGC
ATGTCAAAAGCAAAGCCTACCAACAGCGAGTTCATCGCGATGGTCGCCGACAAGCTGCGCCTGGAGCATAAGGCGTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

91.76

100

0.921