Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P3X63_RS09180 Genome accession   NZ_CP120679
Coordinates   1796336..1797223 (+) Length   295 a.a.
NCBI ID   WP_026586953.1    Uniprot ID   A0A6I7FDP9
Organism   Bacillus sp. HSf4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1791336..1802223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS09160 (P3X63_09160) - 1791998..1793704 (+) 1707 WP_026586949.1 hypothetical protein -
  P3X63_RS09165 (P3X63_09165) - 1793701..1793982 (+) 282 WP_026586950.1 FlhB-like flagellar biosynthesis protein -
  P3X63_RS09170 (P3X63_09170) sucC 1794157..1795317 (+) 1161 WP_026586951.1 ADP-forming succinate--CoA ligase subunit beta -
  P3X63_RS09175 (P3X63_09175) sucD 1795336..1796238 (+) 903 WP_026586952.1 succinate--CoA ligase subunit alpha -
  P3X63_RS09180 (P3X63_09180) dprA 1796336..1797223 (+) 888 WP_026586953.1 DNA-processing protein DprA Machinery gene
  P3X63_RS09185 (P3X63_09185) topA 1797443..1799518 (+) 2076 WP_026586954.1 type I DNA topoisomerase -
  P3X63_RS09190 (P3X63_09190) trmFO 1799595..1800899 (+) 1305 WP_026586955.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3X63_RS09195 (P3X63_09195) xerC 1800966..1801880 (+) 915 WP_026586956.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32587.69 Da        Isoelectric Point: 10.2551

>NTDB_id=807660 P3X63_RS09180 WP_026586953.1 1796336..1797223(+) (dprA) [Bacillus sp. HSf4]
MTVSSELLILLRLRGALSPSLLSKWWRTDPSLSLSDKKNHPLTRLSGKALDLSPIRKLVEQELPNVKHLIKSYQAAGVDM
LAISSPEYPPSLKTIHDPPPVLFLKGNQQLLRVHRRIGIVGTRRPTLYGKRAAIYYVKELSKKGWTIVSGLAKGIDGLSH
HESIRSNGATIGVIAGGFSHIYPRENRFLADQMAADHLLVSEHPPETRPQKWHFPMRNRLISGLTEGVIIVQGKERSGSL
ITAYQALEEGREVFAVPGSIFDANSLGPARLIQEGAKLAFDIDDILSELPPSNVQ

Nucleotide


Download         Length: 888 bp        

>NTDB_id=807660 P3X63_RS09180 WP_026586953.1 1796336..1797223(+) (dprA) [Bacillus sp. HSf4]
ATGACTGTCAGCAGCGAACTTTTGATTTTGCTCCGCCTGCGCGGCGCGCTCTCTCCTTCACTGCTTTCCAAATGGTGGAG
AACAGACCCCTCTTTATCTCTTTCAGACAAAAAAAACCATCCTTTAACACGGCTTTCAGGAAAAGCATTAGATTTATCTC
CGATTCGAAAGCTTGTTGAACAAGAACTCCCGAATGTCAAACACCTCATCAAGTCCTATCAAGCAGCAGGAGTGGATATG
CTTGCCATATCATCCCCTGAGTATCCGCCTTCTCTAAAGACGATCCATGATCCGCCCCCCGTCCTTTTTCTGAAAGGAAA
TCAACAGCTTCTTCGTGTCCATCGGCGAATCGGCATTGTCGGAACCCGCAGACCAACTTTATATGGGAAAAGAGCCGCAA
TTTATTATGTGAAGGAACTAAGTAAAAAAGGCTGGACGATCGTCAGCGGGCTTGCAAAAGGAATTGACGGACTATCTCAC
CATGAGAGCATCCGTTCAAACGGGGCGACCATCGGCGTCATTGCAGGCGGATTCAGCCATATCTACCCCCGTGAAAACCG
TTTTCTTGCCGACCAGATGGCGGCAGACCATCTCCTGGTGTCTGAGCACCCTCCCGAGACAAGACCCCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTGACTGAAGGCGTTATCATCGTTCAAGGAAAGGAAAGAAGCGGCTCGCTC
ATCACCGCCTATCAAGCGCTTGAAGAAGGGCGGGAAGTGTTTGCAGTGCCCGGTTCCATCTTTGATGCGAATTCGCTCGG
ACCCGCAAGGCTGATCCAGGAAGGGGCAAAACTGGCATTCGATATCGACGATATTTTGAGCGAACTTCCGCCTTCCAATG
TTCAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7FDP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

58.305

100

0.583
  dprA Streptococcus mutans UA159

43.123

91.186

0.393
  dprA Lactococcus lactis subsp. cremoris KW2

40.149

91.186

0.366