Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P3X63_RS00605 Genome accession   NZ_CP120679
Coordinates   111248..112627 (+) Length   459 a.a.
NCBI ID   WP_277692245.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 106248..117627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS00585 (P3X63_00585) - 106611..107075 (+) 465 WP_026586095.1 CtsR family transcriptional regulator -
  P3X63_RS00590 (P3X63_00590) - 107090..107650 (+) 561 WP_026586094.1 UvrB/UvrC motif-containing protein -
  P3X63_RS00595 (P3X63_00595) - 107650..108741 (+) 1092 WP_026586093.1 protein arginine kinase -
  P3X63_RS00600 (P3X63_00600) clpC 108738..111170 (+) 2433 WP_026586092.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  P3X63_RS00605 (P3X63_00605) radA 111248..112627 (+) 1380 WP_277692245.1 DNA repair protein RadA Machinery gene
  P3X63_RS00610 (P3X63_00610) disA 112631..113707 (+) 1077 WP_026586090.1 DNA integrity scanning diadenylate cyclase DisA -
  P3X63_RS00615 (P3X63_00615) - 113814..114902 (+) 1089 WP_026586089.1 PIN/TRAM domain-containing protein -
  P3X63_RS00620 (P3X63_00620) ispD 114917..115612 (+) 696 WP_026586088.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  P3X63_RS00625 (P3X63_00625) ispF 115605..116081 (+) 477 WP_026586087.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  P3X63_RS00630 (P3X63_00630) gltX 116161..117618 (+) 1458 WP_026586086.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49983.55 Da        Isoelectric Point: 7.6840

>NTDB_id=807638 P3X63_RS00605 WP_277692245.1 111248..112627(+) (radA) [Bacillus sp. HSf4]
MAKTKSKFICQSCGYESAKWMGKCPGCGAWNTMVEEMIKKQAANRRTAFSHSIQKVQKPSPITSIETTEEPRVQTKLREF
NRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADLKENVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDAPPQPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPSANVEGWTKPKGIEVVGVENVAEALRASLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=807638 P3X63_RS00605 WP_277692245.1 111248..112627(+) (radA) [Bacillus sp. HSf4]
ATGGCTAAAACGAAAAGTAAATTTATTTGTCAATCATGCGGCTATGAATCAGCCAAATGGATGGGGAAGTGTCCGGGATG
CGGCGCATGGAACACCATGGTCGAAGAAATGATCAAAAAGCAGGCCGCTAACAGAAGAACCGCCTTTTCACATTCCATCC
AAAAGGTGCAAAAGCCATCCCCCATTACATCAATTGAAACGACGGAAGAGCCGAGGGTCCAAACGAAATTGCGCGAGTTC
AACCGCGTTTTGGGAAATGGCATCGTCAAGGGATCGCTCGTGTTAATCGGCGGTGACCCAGGTATCGGAAAATCCACTTT
GCTGCTGCAGGTGTCTGCCCAGCTTGCTGATTTGAAGGAAAATGTCCTGTACATATCAGGGGAAGAATCGGTCAAACAAA
CAAAGCTGAGAGCGGACCGCCTCGGCATCAACAGTCCAACTCTTCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAACCCTTCATTTGTGGTGGTAGACTCTATTCAAACCGTTTACCAAAGCGATATTACATCAGC
CCCGGGCAGCGTATCCCAGGTCAGGGAATGCACCGCTGAGCTGATGAGAATTGCCAAAACAAAAGGGATTCCAATATTTA
TCGTCGGCCATGTCACAAAAGAGGGCTCGATTGCCGGCCCGAGACTGCTTGAGCACATGGTCGACACCGTTCTTTATTTT
GAAGGAGAACGCCATCACACATTCCGGATTTTAAGAGCTGTTAAAAACAGGTTTGGATCGACAAACGAGATGGGGATTTT
TGAAATGAGAGAAGAAGGCTTGACAGAGGTGCTGAATCCGTCGGAAATTTTTCTCGAAGAACGTTCGGCAGGTGCCGCCG
GGTCAAGCGTTGTCGCCTCAATGGAAGGCACTAGACCGGTTCTGGTCGAAATTCAAGCGCTGATCTCACCTACCAGCTTC
GGGAATCCGCGCAGAATGGCTACCGGAATCGATCATAATCGCGTCTCCCTGCTCATGGCGGTTCTCGAAAAAAGAGTGGG
TCTCCTGCTGCAAAATCAAGATGCATATTTAAAAGTTGCCGGCGGAGTGAAGCTGGATGAGCCCGCGATCGACCTTGCCG
TTGCAATCAGTATCGCGTCAAGCTTCAGGGATGCTCCGCCTCAACCGACAGATTGCTTTATCGGCGAGGTCGGCCTTACG
GGAGAGGTCCGCAGAGTATCAAGAATTGAACAGAGGGTTCAAGAAGCCGCAAAGCTTGGTTTCAAAAGAATGATTATCCC
TTCTGCCAATGTGGAAGGCTGGACCAAGCCGAAGGGAATTGAGGTCGTCGGTGTTGAAAATGTTGCTGAGGCCCTTCGAG
CTTCATTAGGAGGATCATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

91.266

99.782

0.911
  radA Streptococcus pneumoniae Rx1

62.252

98.693

0.614
  radA Streptococcus pneumoniae D39

62.252

98.693

0.614
  radA Streptococcus pneumoniae R6

62.252

98.693

0.614
  radA Streptococcus pneumoniae TIGR4

62.252

98.693

0.614
  radA Streptococcus mitis NCTC 12261

62.252

98.693

0.614
  radA Streptococcus mitis SK321

62.031

98.693

0.612