Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RM375_RS23030 Genome accession   NZ_CP134715
Coordinates   4754384..4754920 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain RIVM_C040753     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4749384..4759920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RM375_RS23010 (RM375_23010) soxR 4751113..4751577 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  RM375_RS23015 (RM375_23015) soxS 4751663..4751986 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RM375_RS23020 (RM375_23020) pdeC 4751989..4753575 (-) 1587 WP_001335263.1 c-di-GMP phosphodiesterase PdeC -
  RM375_RS23025 (RM375_23025) yjcB 4754004..4754285 (+) 282 WP_001298294.1 YjcB family protein -
  RM375_RS23030 (RM375_23030) ssb 4754384..4754920 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RM375_RS23035 (RM375_23035) uvrA 4755175..4757997 (+) 2823 WP_000357768.1 excinuclease ABC subunit UvrA Machinery gene
  RM375_RS23040 (RM375_23040) yjbR 4758032..4758388 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RM375_RS23045 (RM375_23045) yjbQ 4758392..4758808 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RM375_RS23050 (RM375_23050) aphA 4758919..4759632 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=807565 RM375_RS23030 WP_000168305.1 4754384..4754920(-) (ssb) [Escherichia coli strain RIVM_C040753]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=807565 RM375_RS23030 WP_000168305.1 4754384..4754920(-) (ssb) [Escherichia coli strain RIVM_C040753]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489