Detailed information NTG0080756

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HXS58_RS04650
• Genome accession: NZ_AP023036
• Coordinates: 918324..919268 (-)
• Length: 314 a.a.
• NCBI ID: WP_006564967.1
• Uniprot ID: E7G286
• Organism: Helicobacter suis strain NHP19-0020
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 913324..924268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HXS58_RS04625 (NHP190020_09600)	-	913888..914343 (-)	456	WP_034375034.1	peroxiredoxin	-
HXS58_RS04630 (NHP190020_09610)	-	914352..914996 (-)	645	WP_006564926.1	LutC/YkgG family protein	-
HXS58_RS04635 (NHP190020_09620)	-	914989..916434 (-)	1446	WP_006564925.1	LutB/LldF family L-lactate oxidation iron-sulfur protein	-
HXS58_RS04640 (NHP190020_09630)	-	916431..917168 (-)	738	WP_006564924.1	(Fe-S)-binding protein	-
HXS58_RS04645 (NHP190020_09640)	comB10	917221..918327 (-)	1107	WP_176485116.1	DNA type IV secretion system protein ComB10	Machinery gene
HXS58_RS04650 (NHP190020_09650)	comB9	918324..919268 (-)	945	WP_006564967.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HXS58_RS04655 (NHP190020_09660)	-	919357..920394 (+)	1038	WP_176485115.1	flagellar basal body P-ring protein FlgI	-
HXS58_RS04660 (NHP190020_09670)	-	920391..920702 (+)	312	WP_006564920.1	hypothetical protein	-
HXS58_RS04665 (NHP190020_09680)	-	920771..921745 (+)	975	WP_006564919.1	sensor histidine kinase	-
HXS58_RS04670 (NHP190020_09690)	-	921818..922258 (+)	441	WP_006564918.1	Dps family protein	-
HXS58_RS04675 (NHP190020_09700)	-	922258..922533 (+)	276	WP_034375042.1	DUF2018 family protein	-
HXS58_RS04680 (NHP190020_09710)	-	922526..922912 (+)	387	WP_034375045.1	hypothetical protein	-
HXS58_RS04685 (NHP190020_09720)	-	922897..923802 (+)	906	WP_006564970.1	polyprenyl synthetase family protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36331.03 Da
• Isoelectric Point: 9.4755

>NTDB_id=80756 HXS58_RS04650 WP_006564967.1 918324..919268(-) (comB9) [Helicobacter suis strain NHP19-0020]
MCLRIWLLLFLGCLLVADSTAQPEEEEEEPPIYSMQDLHAIQSSFFKRERGDLDNTLFMDYRLGQTPKLRLRYAMITTLV
FSEPIREVILGDSVGFSTKMLGHERHQNSNVLLIKPLQIGIDSNLSVVGKSGKIYTFYIFSTTFTSPKHPVLNVYVSNKH
FFQSSPDQPLAKFEEKEILKSNVLESKKDTPDSTRYLKIGDASNAMWIDKTQIKRNYKVLGSRKRAWFCLWLCRIDTAKL
IKPLDIFNDAHFTYFKFDRKASQVKFPVAYKVVDGYDNPINTRIVGDYLIAEDIANKWTLREGKLHACIRRTRP

Nucleotide

• Length: 945 bp

>NTDB_id=80756 HXS58_RS04650 WP_006564967.1 918324..919268(-) (comB9) [Helicobacter suis strain NHP19-0020]
ATGTGTTTAAGGATTTGGCTTTTGCTTTTTTTAGGGTGTTTATTAGTGGCTGATTCTACTGCTCAGCCAGAAGAGGAGGA
AGAAGAACCTCCCATTTACTCCATGCAAGATCTGCATGCCATTCAAAGTAGTTTTTTTAAAAGAGAGCGAGGGGATCTAG
ACAACACATTATTTATGGATTATCGCTTAGGCCAAACCCCTAAATTACGCCTGCGTTATGCGATGATCACTACTTTAGTT
TTTAGTGAACCTATTAGAGAGGTGATTTTGGGCGATAGTGTAGGTTTTAGCACTAAAATGCTAGGCCATGAGCGCCACCA
AAATAGCAATGTCTTACTCATTAAACCGCTACAAATTGGCATTGATTCTAACTTAAGCGTGGTGGGTAAGAGTGGTAAGA
TTTATACTTTCTATATCTTTTCAACCACCTTTACAAGCCCTAAACACCCTGTTTTAAATGTCTATGTTTCCAATAAGCAT
TTTTTCCAATCTAGCCCAGATCAACCCCTAGCTAAATTTGAAGAAAAAGAGATTTTAAAGAGCAATGTTTTAGAGAGTAA
AAAGGACACACCCGATTCTACGCGTTATCTTAAAATCGGAGATGCCAGTAATGCCATGTGGATTGATAAAACCCAAATTA
AGAGAAACTATAAAGTTTTAGGGAGTAGAAAAAGGGCTTGGTTTTGTCTGTGGCTGTGTAGAATTGATACGGCTAAACTA
ATCAAACCCCTAGACATTTTTAACGACGCTCACTTTACCTACTTTAAATTTGATCGCAAAGCCTCTCAAGTTAAATTTCC
TGTAGCCTATAAAGTTGTAGATGGGTATGATAACCCCATTAATACCCGCATTGTAGGGGATTATCTCATCGCTGAGGATA
TTGCCAATAAATGGACTCTTAGAGAGGGCAAACTCCATGCCTGTATCCGCCGTACCCGCCCATGA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (58-311)

3D structure

• AlphaFold DB: E7G286

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	48.024	100	0.503