Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HXS58_RS04645 | Genome accession | NZ_AP023036 |
| Coordinates | 917221..918327 (-) | Length | 368 a.a. |
| NCBI ID | WP_176485116.1 | Uniprot ID | - |
| Organism | Helicobacter suis strain NHP19-0020 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 912221..923327
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS58_RS04620 (NHP190020_09590) | rfaE1 | 912270..913694 (+) | 1425 | WP_034375031.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| HXS58_RS04625 (NHP190020_09600) | - | 913888..914343 (-) | 456 | WP_034375034.1 | peroxiredoxin | - |
| HXS58_RS04630 (NHP190020_09610) | - | 914352..914996 (-) | 645 | WP_006564926.1 | LutC/YkgG family protein | - |
| HXS58_RS04635 (NHP190020_09620) | - | 914989..916434 (-) | 1446 | WP_006564925.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| HXS58_RS04640 (NHP190020_09630) | - | 916431..917168 (-) | 738 | WP_006564924.1 | (Fe-S)-binding protein | - |
| HXS58_RS04645 (NHP190020_09640) | comB10 | 917221..918327 (-) | 1107 | WP_176485116.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HXS58_RS04650 (NHP190020_09650) | comB9 | 918324..919268 (-) | 945 | WP_006564967.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HXS58_RS04655 (NHP190020_09660) | - | 919357..920394 (+) | 1038 | WP_176485115.1 | flagellar basal body P-ring protein FlgI | - |
| HXS58_RS04660 (NHP190020_09670) | - | 920391..920702 (+) | 312 | WP_006564920.1 | hypothetical protein | - |
| HXS58_RS04665 (NHP190020_09680) | - | 920771..921745 (+) | 975 | WP_006564919.1 | sensor histidine kinase | - |
| HXS58_RS04670 (NHP190020_09690) | - | 921818..922258 (+) | 441 | WP_006564918.1 | Dps family protein | - |
| HXS58_RS04675 (NHP190020_09700) | - | 922258..922533 (+) | 276 | WP_034375042.1 | DUF2018 family protein | - |
| HXS58_RS04680 (NHP190020_09710) | - | 922526..922912 (+) | 387 | WP_034375045.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 41169.58 Da Isoelectric Point: 7.4578
>NTDB_id=80755 HXS58_RS04645 WP_176485116.1 917221..918327(-) (comB10) [Helicobacter suis strain NHP19-0020]
MNSLVKKLIIGLGMGVVIMASSLWWHKRNEQPEAVLEVEESNYPLSDYLFVPKQQQKEDPKDSEDYKRLEQILEENAKQI
TALKAQLKQASQKPPPQITPPPPQEIDSTQQDILASRIKAFEISQDEPKEQEPISVLDYGVDHFDNLKAKDVATHENRLL
RTITADKMIPAFLITPISSQLGGKVIAQVESDVFANMGRAILIPKGSKVIGYYNNNNKIGEYRLDIVWTRILTPQGVNIM
LTNAKGADVKGYSGLVGEMITHNFQRYGMPLLVSTISNGLLIALTSAIANKTGKNNFFGDYLLMQMTRQTGMGLNQIVAQ
ILRDKSNLKPIIIIREGSRVFIAPNLDIFFPVPKEGEILAQFFTHSLP
MNSLVKKLIIGLGMGVVIMASSLWWHKRNEQPEAVLEVEESNYPLSDYLFVPKQQQKEDPKDSEDYKRLEQILEENAKQI
TALKAQLKQASQKPPPQITPPPPQEIDSTQQDILASRIKAFEISQDEPKEQEPISVLDYGVDHFDNLKAKDVATHENRLL
RTITADKMIPAFLITPISSQLGGKVIAQVESDVFANMGRAILIPKGSKVIGYYNNNNKIGEYRLDIVWTRILTPQGVNIM
LTNAKGADVKGYSGLVGEMITHNFQRYGMPLLVSTISNGLLIALTSAIANKTGKNNFFGDYLLMQMTRQTGMGLNQIVAQ
ILRDKSNLKPIIIIREGSRVFIAPNLDIFFPVPKEGEILAQFFTHSLP
Nucleotide
Download Length: 1107 bp
>NTDB_id=80755 HXS58_RS04645 WP_176485116.1 917221..918327(-) (comB10) [Helicobacter suis strain NHP19-0020]
ATGAATTCTCTTGTTAAAAAGTTGATTATTGGATTGGGTATGGGTGTGGTGATCATGGCCTCTTCTCTTTGGTGGCATAA
AAGAAACGAACAACCGGAGGCCGTTTTAGAAGTAGAAGAATCTAACTATCCGCTTTCTGATTATTTATTTGTACCAAAAC
AACAACAAAAAGAAGATCCTAAGGATTCAGAGGATTACAAACGCCTAGAGCAAATATTAGAAGAAAATGCCAAGCAAATT
ACAGCTCTAAAGGCACAGCTTAAACAAGCATCACAAAAGCCACCGCCTCAAATAACCCCCCCGCCCCCACAAGAGATAGA
TAGCACGCAACAAGATATACTAGCCTCTCGTATTAAAGCCTTTGAAATTTCTCAAGATGAGCCTAAAGAGCAAGAACCAA
TTTCAGTACTAGACTATGGAGTTGATCATTTTGATAATCTCAAAGCTAAAGATGTGGCCACCCATGAAAATAGGCTTTTG
CGCACTATCACCGCTGATAAAATGATCCCCGCTTTTTTGATCACACCTATTAGCTCCCAGTTAGGCGGTAAGGTTATTGC
ACAGGTAGAAAGCGATGTATTTGCTAACATGGGACGGGCTATTTTAATCCCCAAGGGCTCTAAAGTTATAGGTTATTACA
ATAATAACAACAAAATAGGCGAGTACCGCCTTGATATTGTGTGGACTCGTATCCTCACGCCACAAGGGGTTAATATCATG
CTCACAAACGCCAAAGGCGCAGATGTTAAAGGCTATAGTGGACTAGTAGGTGAGATGATCACGCATAATTTCCAGCGCTA
TGGCATGCCTCTTTTAGTCTCTACCATTTCTAATGGCCTACTCATTGCGCTTACCTCAGCCATTGCCAATAAAACAGGTA
AAAATAATTTCTTTGGCGATTATCTTTTAATGCAAATGACGCGCCAAACGGGCATGGGATTAAACCAAATTGTAGCCCAG
ATTCTAAGAGATAAAAGCAATCTCAAGCCTATTATTATCATTAGAGAGGGGAGTAGAGTTTTTATCGCGCCTAATTTAGA
TATTTTTTTTCCTGTGCCTAAAGAGGGCGAGATATTAGCGCAGTTTTTTACCCATTCGTTGCCTTAG
ATGAATTCTCTTGTTAAAAAGTTGATTATTGGATTGGGTATGGGTGTGGTGATCATGGCCTCTTCTCTTTGGTGGCATAA
AAGAAACGAACAACCGGAGGCCGTTTTAGAAGTAGAAGAATCTAACTATCCGCTTTCTGATTATTTATTTGTACCAAAAC
AACAACAAAAAGAAGATCCTAAGGATTCAGAGGATTACAAACGCCTAGAGCAAATATTAGAAGAAAATGCCAAGCAAATT
ACAGCTCTAAAGGCACAGCTTAAACAAGCATCACAAAAGCCACCGCCTCAAATAACCCCCCCGCCCCCACAAGAGATAGA
TAGCACGCAACAAGATATACTAGCCTCTCGTATTAAAGCCTTTGAAATTTCTCAAGATGAGCCTAAAGAGCAAGAACCAA
TTTCAGTACTAGACTATGGAGTTGATCATTTTGATAATCTCAAAGCTAAAGATGTGGCCACCCATGAAAATAGGCTTTTG
CGCACTATCACCGCTGATAAAATGATCCCCGCTTTTTTGATCACACCTATTAGCTCCCAGTTAGGCGGTAAGGTTATTGC
ACAGGTAGAAAGCGATGTATTTGCTAACATGGGACGGGCTATTTTAATCCCCAAGGGCTCTAAAGTTATAGGTTATTACA
ATAATAACAACAAAATAGGCGAGTACCGCCTTGATATTGTGTGGACTCGTATCCTCACGCCACAAGGGGTTAATATCATG
CTCACAAACGCCAAAGGCGCAGATGTTAAAGGCTATAGTGGACTAGTAGGTGAGATGATCACGCATAATTTCCAGCGCTA
TGGCATGCCTCTTTTAGTCTCTACCATTTCTAATGGCCTACTCATTGCGCTTACCTCAGCCATTGCCAATAAAACAGGTA
AAAATAATTTCTTTGGCGATTATCTTTTAATGCAAATGACGCGCCAAACGGGCATGGGATTAAACCAAATTGTAGCCCAG
ATTCTAAGAGATAAAAGCAATCTCAAGCCTATTATTATCATTAGAGAGGGGAGTAGAGTTTTTATCGCGCCTAATTTAGA
TATTTTTTTTCCTGTGCCTAAAGAGGGCGAGATATTAGCGCAGTTTTTTACCCATTCGTTGCCTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
56.764 |
100 |
0.582 |