Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P4B11_RS13620 Genome accession   NZ_CP120652
Coordinates   2722308..2722703 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 205M     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2717308..2727703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B11_RS13590 (P4B11_13615) - 2718567..2718971 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  P4B11_RS13595 (P4B11_13620) - 2719308..2719400 (+) 93 WP_001790611.1 hypothetical protein -
  P4B11_RS13600 (P4B11_13625) - 2719532..2719765 (+) 234 WP_000384523.1 DUF1146 family protein -
  P4B11_RS13605 (P4B11_13630) murA 2719876..2721141 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P4B11_RS13610 (P4B11_13635) fabZ 2721175..2721615 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P4B11_RS13615 (P4B11_13640) - 2721674..2722114 (-) 441 WP_404968739.1 YwpF-like family protein -
  P4B11_RS13620 (P4B11_13645) ssb 2722308..2722703 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  P4B11_RS13625 (P4B11_13650) sceD 2723092..2723787 (+) 696 WP_000752005.1 lytic transglycosylase SceD -
  P4B11_RS13630 (P4B11_13655) tenA 2724174..2724863 (+) 690 WP_000396077.1 thiaminase II -
  P4B11_RS13635 (P4B11_13660) thiD 2724856..2725686 (+) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P4B11_RS13640 (P4B11_13665) thiM 2725670..2726461 (+) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  P4B11_RS13645 (P4B11_13670) thiE 2726463..2727104 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=807488 P4B11_RS13620 WP_000932694.1 2722308..2722703(+) (ssb) [Staphylococcus aureus strain 205M]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=807488 P4B11_RS13620 WP_000932694.1 2722308..2722703(+) (ssb) [Staphylococcus aureus strain 205M]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992