Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P6S76_RS16385 Genome accession   NZ_CP120641
Coordinates   3378913..3379602 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain YL2021     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3373913..3384602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S76_RS16350 - 3374110..3374592 (-) 483 WP_003151394.1 flagellar protein FlgN -
  P6S76_RS16355 flgM 3374607..3374873 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  P6S76_RS16360 - 3374943..3375362 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  P6S76_RS16365 comFC 3375436..3376125 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  P6S76_RS16370 - 3376131..3376415 (-) 285 WP_007407481.1 competence protein ComFB -
  P6S76_RS16375 comFA 3376473..3377858 (-) 1386 WP_007407482.1 DEAD/DEAH box helicase Machinery gene
  P6S76_RS16380 - 3377967..3378815 (-) 849 WP_007407483.1 DegV family protein -
  P6S76_RS16385 degU 3378913..3379602 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P6S76_RS16390 degS 3379679..3380842 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  P6S76_RS16395 - 3381065..3381712 (+) 648 WP_007407485.1 YigZ family protein -
  P6S76_RS16400 - 3381717..3382937 (+) 1221 WP_007407486.1 LCP family protein -
  P6S76_RS16405 - 3383036..3384112 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=807437 P6S76_RS16385 WP_003219701.1 3378913..3379602(-) (degU) [Bacillus velezensis strain YL2021]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=807437 P6S76_RS16385 WP_003219701.1 3378913..3379602(-) (degU) [Bacillus velezensis strain YL2021]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1