Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   P6S76_RS11650 Genome accession   NZ_CP120641
Coordinates   2469522..2470136 (-) Length   204 a.a.
NCBI ID   WP_007408263.1    Uniprot ID   -
Organism   Bacillus velezensis strain YL2021     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2464522..2475136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S76_RS11620 rpsT 2464826..2465092 (+) 267 WP_003152876.1 30S ribosomal protein S20 -
  P6S76_RS11625 holA 2465109..2466150 (-) 1042 Protein_2242 DNA polymerase III subunit delta -
  P6S76_RS11630 - 2466208..2466341 (-) 134 Protein_2243 hypothetical protein -
  P6S76_RS11635 - 2466382..2466516 (+) 135 WP_003152870.1 YqzM family protein -
  P6S76_RS11640 comEC 2466535..2468886 (-) 2352 WP_007408265.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P6S76_RS11645 - 2468887..2469456 (-) 570 WP_007408264.1 ComE operon protein 2 -
  P6S76_RS11650 comEA 2469522..2470136 (-) 615 WP_007408263.1 helix-hairpin-helix domain-containing protein Machinery gene
  P6S76_RS11655 comER 2470195..2471016 (+) 822 WP_007408262.1 late competence protein ComER -
  P6S76_RS11660 - 2471085..2471822 (-) 738 WP_007408261.1 class I SAM-dependent methyltransferase -
  P6S76_RS11665 rsfS 2471819..2472175 (-) 357 WP_007408260.1 ribosome silencing factor -
  P6S76_RS11670 yqeK 2472193..2472753 (-) 561 WP_007408259.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  P6S76_RS11675 - 2472743..2473312 (-) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  P6S76_RS11680 yhbY 2473323..2473613 (-) 291 WP_007408257.1 ribosome assembly RNA-binding protein YhbY -
  P6S76_RS11685 aroE 2473607..2474449 (-) 843 WP_007408256.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22223.39 Da        Isoelectric Point: 6.4940

>NTDB_id=807421 P6S76_RS11650 WP_007408263.1 2469522..2470136(-) (comEA) [Bacillus velezensis strain YL2021]
MTKAMMTERLRRNLKILGACLAAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDVKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREEKGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=807421 P6S76_RS11650 WP_007408263.1 2469522..2470136(-) (comEA) [Bacillus velezensis strain YL2021]
ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGCGGCAGGGGCGGTTTT
TATCTGTATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTCGCGGACAAAAAAGACACCGCAGACGACAAGATTATGATTGATGTGAAAGGCGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGAGTGACGCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAATGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CGGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCTTACCGAGAAGAAAAAGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAGAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(141-202)

SLBB domain (SLBB)

(68-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.333

94.118

0.549
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

35.071

100

0.363