Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P6S76_RS01815 Genome accession   NZ_CP120641
Coordinates   378626..379063 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain YL2021     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 373626..384063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S76_RS01790 - 374646..375782 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  P6S76_RS01795 - 375797..376231 (+) 435 WP_007409358.1 RDD family protein -
  P6S76_RS01800 - 376303..376626 (+) 324 WP_007409357.1 YckD family protein -
  P6S76_RS01805 - 376730..378166 (+) 1437 WP_007409356.1 family 1 glycosylhydrolase -
  P6S76_RS01810 nin/comJ 378207..378605 (-) 399 WP_007409355.1 competence protein ComJ Regulator
  P6S76_RS01815 nucA/comI 378626..379063 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P6S76_RS01820 hxlB 379420..379977 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  P6S76_RS01825 hxlA 379974..380609 (-) 636 WP_007409353.1 3-hexulose-6-phosphate synthase -
  P6S76_RS01830 - 380840..381202 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=807378 P6S76_RS01815 WP_003156588.1 378626..379063(-) (nucA/comI) [Bacillus velezensis strain YL2021]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=807378 P6S76_RS01815 WP_003156588.1 378626..379063(-) (nucA/comI) [Bacillus velezensis strain YL2021]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641