Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   P5657_RS12200 Genome accession   NZ_CP120621
Coordinates   2326846..2327649 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 13019     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2321846..2332649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS12180 (P5657_12180) yqxC 2321960..2322805 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  P5657_RS12185 (P5657_12185) argR 2322903..2323352 (+) 450 WP_021480005.1 arginine repressor ArgR -
  P5657_RS12190 (P5657_12190) recN 2323385..2325115 (+) 1731 WP_017696435.1 DNA repair protein RecN Machinery gene
  P5657_RS12195 (P5657_12195) spoIVB 2325290..2326570 (+) 1281 WP_021480004.1 SpoIVB peptidase -
  P5657_RS12200 (P5657_12200) spo0A 2326846..2327649 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  P5657_RS12205 (P5657_12205) yqiG 2328114..2329232 (-) 1119 WP_277709895.1 NADH-dependent flavin oxidoreductase -
  P5657_RS12210 (P5657_12210) - 2329305..2329457 (-) 153 WP_014480226.1 hypothetical protein -
  P5657_RS12215 (P5657_12215) - 2329765..2330061 (+) 297 WP_014480225.1 hypothetical protein -
  P5657_RS12220 (P5657_12220) yqiI 2330081..2330701 (+) 621 WP_080276607.1 N-acetylmuramoyl-L-alanine amidase -
  P5657_RS12225 (P5657_12225) glpQB 2330780..2331511 (+) 732 WP_277709896.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=807065 P5657_RS12200 WP_003226427.1 2326846..2327649(+) (spo0A) [Bacillus subtilis strain DSM 13019]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=807065 P5657_RS12200 WP_003226427.1 2326846..2327649(+) (spo0A) [Bacillus subtilis strain DSM 13019]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCTGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1