Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   P5657_RS12190 Genome accession   NZ_CP120621
Coordinates   2323385..2325115 (+) Length   576 a.a.
NCBI ID   WP_017696435.1    Uniprot ID   A0AAP2M4B1
Organism   Bacillus subtilis strain DSM 13019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2318385..2330115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS12165 (P5657_12165) xseB 2318753..2319007 (+) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -
  P5657_RS12170 (P5657_12170) ispA 2318997..2319887 (+) 891 WP_003230262.1 polyprenyl synthetase family protein -
  P5657_RS12175 (P5657_12175) dxs 2320062..2321963 (+) 1902 WP_015384069.1 1-deoxy-D-xylulose-5-phosphate synthase -
  P5657_RS12180 (P5657_12180) yqxC 2321960..2322805 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  P5657_RS12185 (P5657_12185) argR 2322903..2323352 (+) 450 WP_021480005.1 arginine repressor ArgR -
  P5657_RS12190 (P5657_12190) recN 2323385..2325115 (+) 1731 WP_017696435.1 DNA repair protein RecN Machinery gene
  P5657_RS12195 (P5657_12195) spoIVB 2325290..2326570 (+) 1281 WP_021480004.1 SpoIVB peptidase -
  P5657_RS12200 (P5657_12200) spo0A 2326846..2327649 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  P5657_RS12205 (P5657_12205) yqiG 2328114..2329232 (-) 1119 WP_277709895.1 NADH-dependent flavin oxidoreductase -
  P5657_RS12210 (P5657_12210) - 2329305..2329457 (-) 153 WP_014480226.1 hypothetical protein -
  P5657_RS12215 (P5657_12215) - 2329765..2330061 (+) 297 WP_014480225.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64523.37 Da        Isoelectric Point: 4.7429

>NTDB_id=807064 P5657_RS12190 WP_017696435.1 2323385..2325115(+) (recN) [Bacillus subtilis strain DSM 13019]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQEISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=807064 P5657_RS12190 WP_017696435.1 2323385..2325115(+) (recN) [Bacillus subtilis strain DSM 13019]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGGAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCTTCAGCGCAACTTGAAGATATCTCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACACGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCGCCGCTTGTAAACGGCCAGCCCGTTCAACTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAACAGGATGTGACATCGATCATTTTTGACGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGTTCACAAGTACTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTTA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAAGTAACCGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995