Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   P5657_RS01050 Genome accession   NZ_CP120621
Coordinates   185656..186804 (-) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis strain DSM 13019     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 180656..191804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS01020 (P5657_01020) yclO 181374..182321 (-) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  P5657_RS01025 (P5657_01025) ceuB 182314..183264 (-) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  P5657_RS01030 (P5657_01030) thrD 183649..185013 (+) 1365 WP_021481755.1 aspartate kinase -
  P5657_RS01035 (P5657_01035) yczN 185166..185279 (+) 114 WP_014478831.1 YjcZ family sporulation protein -
  P5657_RS01040 (P5657_01040) yczM 185361..185450 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  P5657_RS01045 (P5657_01045) phrC 185550..185672 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  P5657_RS01050 (P5657_01050) rapC 185656..186804 (-) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  P5657_RS01055 (P5657_01055) yclK 186967..188388 (-) 1422 WP_072173981.1 two-component system sensor histidine kinase YclK -
  P5657_RS01060 (P5657_01060) yclJ 188375..189058 (-) 684 WP_015482792.1 two-component system response regulator YclJ -
  P5657_RS01065 (P5657_01065) yclI 189271..190737 (+) 1467 WP_163117827.1 ABC transporter permease -
  P5657_RS01070 (P5657_01070) yclH 190753..191433 (+) 681 WP_041850693.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=807015 P5657_RS01050 WP_014475800.1 185656..186804(-) (rapC) [Bacillus subtilis strain DSM 13019]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=807015 P5657_RS01050 WP_014475800.1 185656..186804(-) (rapC) [Bacillus subtilis strain DSM 13019]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568