Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RLT59_RS34920 Genome accession   NZ_CP134612
Coordinates   7697036..7697671 (-) Length   211 a.a.
NCBI ID   WP_311307096.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7692036..7702671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS34885 (RLT59_34885) - 7692302..7692508 (-) 207 WP_311307089.1 DUF397 domain-containing protein -
  RLT59_RS34890 (RLT59_34890) - 7692534..7693394 (-) 861 WP_311307090.1 helix-turn-helix transcriptional regulator -
  RLT59_RS34895 (RLT59_34895) - 7693614..7694045 (+) 432 WP_311307091.1 ATP-binding protein -
  RLT59_RS34900 (RLT59_34900) - 7694064..7694981 (-) 918 WP_311307092.1 LysR family transcriptional regulator -
  RLT59_RS34905 (RLT59_34905) - 7695054..7695707 (+) 654 WP_311307093.1 LysE family translocator -
  RLT59_RS34910 (RLT59_34910) - 7695741..7696214 (-) 474 WP_311307094.1 C40 family peptidase -
  RLT59_RS34915 (RLT59_34915) - 7696720..7697028 (-) 309 WP_311307095.1 hypothetical protein -
  RLT59_RS34920 (RLT59_34920) clpP 7697036..7697671 (-) 636 WP_311307096.1 ATP-dependent Clp protease proteolytic subunit Regulator
  RLT59_RS34925 (RLT59_34925) - 7697770..7698054 (+) 285 WP_311307097.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  RLT59_RS34930 (RLT59_34930) - 7698120..7699109 (-) 990 WP_311307098.1 ABC transporter permease -
  RLT59_RS34935 (RLT59_34935) - 7699244..7699873 (+) 630 WP_311307099.1 TetR/AcrR family transcriptional regulator -
  RLT59_RS34940 (RLT59_34940) - 7700012..7700314 (+) 303 WP_311307100.1 urease subunit gamma -
  RLT59_RS34945 (RLT59_34945) - 7700328..7700639 (+) 312 WP_311307959.1 urease subunit beta -
  RLT59_RS34950 (RLT59_34950) - 7700632..7702353 (+) 1722 WP_311307101.1 urease subunit alpha -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22785.87 Da        Isoelectric Point: 4.9294

>NTDB_id=806914 RLT59_RS34920 WP_311307096.1 7697036..7697671(-) (clpP) [Streptomyces sp. ITFR-6]
MHRPAARYVLPEFTERTSQGTRTLDPYSKLLAERVVFLGTPVDDVAANDLVAQFMYLEHDAPDRPIQLYINSPGGSFGAV
TAVYDTMSFLTCEVETFCLGQAGAGAAVLLAAGAPGRRHALPGARVVLQQPELPEPVRGQPSDLEIEARELARMRETLTG
ILARHTSRSAEKITEDTERDLILDAEGAKAYGLIDHIVQNRGPALLPPAAG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=806914 RLT59_RS34920 WP_311307096.1 7697036..7697671(-) (clpP) [Streptomyces sp. ITFR-6]
ATGCACCGCCCCGCCGCCCGTTACGTCCTTCCCGAGTTCACCGAGCGCACGTCCCAGGGGACGCGCACGCTCGATCCGTA
CTCCAAACTGCTGGCCGAACGCGTCGTCTTCCTCGGCACCCCGGTCGACGACGTCGCGGCCAACGACCTGGTCGCGCAGT
TCATGTACCTGGAGCACGACGCACCCGACCGGCCCATCCAGCTCTACATCAACTCCCCCGGCGGCTCGTTCGGAGCCGTG
ACGGCGGTGTACGACACGATGTCCTTCCTCACCTGCGAGGTGGAGACGTTCTGTCTCGGCCAGGCCGGCGCCGGCGCGGC
CGTCCTGCTGGCCGCGGGAGCTCCCGGCCGACGGCACGCGCTGCCCGGCGCACGGGTCGTGCTGCAGCAGCCCGAACTCC
CGGAGCCGGTGCGGGGACAGCCGTCCGATTTGGAGATCGAGGCCCGGGAACTGGCCAGGATGCGCGAGACGCTGACGGGC
ATACTGGCCCGTCACACCAGCCGCTCCGCCGAGAAGATCACCGAGGACACCGAGCGCGACCTCATCCTCGACGCCGAGGG
CGCCAAGGCCTACGGGTTGATCGACCACATCGTGCAGAACCGCGGGCCCGCACTGCTGCCGCCCGCCGCGGGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(19-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

43.158

90.047

0.389
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.408

90.521

0.384