Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RLT59_RS31165 Genome accession   NZ_CP134612
Coordinates   6842818..6843462 (+) Length   214 a.a.
NCBI ID   WP_311306493.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6837818..6848462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS31155 (RLT59_31155) - 6840513..6841244 (-) 732 WP_311306491.1 transglycosylase SLT domain-containing protein -
  RLT59_RS31160 (RLT59_31160) - 6841674..6842825 (+) 1152 WP_311306492.1 GAF domain-containing sensor histidine kinase -
  RLT59_RS31165 (RLT59_31165) vraR 6842818..6843462 (+) 645 WP_311306493.1 response regulator transcription factor Regulator
  RLT59_RS31170 (RLT59_31170) - 6843612..6843863 (+) 252 WP_311307913.1 chaplin -
  RLT59_RS31175 (RLT59_31175) - 6843964..6844743 (-) 780 WP_311306494.1 hypothetical protein -
  RLT59_RS31180 (RLT59_31180) - 6844942..6845739 (+) 798 WP_073739907.1 ABC transporter ATP-binding protein -
  RLT59_RS31185 (RLT59_31185) - 6845837..6846268 (+) 432 WP_311306495.1 NfeD family protein -
  RLT59_RS31190 (RLT59_31190) - 6846426..6847367 (+) 942 WP_311306496.1 SPFH domain-containing protein -
  RLT59_RS31195 (RLT59_31195) - 6847430..6848197 (+) 768 WP_311306497.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23123.39 Da        Isoelectric Point: 5.1629

>NTDB_id=806909 RLT59_RS31165 WP_311306493.1 6842818..6843462(+) (vraR) [Streptomyces sp. ITFR-6]
MADRIIKVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGAEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRELENPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVYAGHVLLQPEVAGALLAQDDPGSGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=806909 RLT59_RS31165 WP_311306493.1 6842818..6843462(+) (vraR) [Streptomyces sp. ITFR-6]
GTGGCTGACAGGATCATCAAGGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGCGGTCTGCGTACGTTCCTGGAGAT
CCAGGACGACATAGAGGTCGTCGGAGAGGCCTCCGACGGAGCCGAGGGGGTGGCCAGGACCGAGGAGCTCCGCCCCGACG
TGGTGCTCATGGACATCAAGATGCCCGGCACCGACGGCATAGAGGCGCTGCGCAGGCTCCGGGAGCTGGAGAACCCGGCC
AAGGTGCTGATCGTCACCAGCTTCACCGAACAGCGCACCGTCGTCCCCGCCCTGCGGGCCGGAGCCTCGGGGTACGTCTA
CAAGGACGTCGACCCGGACGCGCTGGCAGGCGCCATCCGCTCGGTGTACGCGGGCCATGTCCTGCTCCAGCCGGAAGTGG
CGGGAGCACTGCTCGCCCAGGACGACCCGGGCAGCGGTACGGGCCGGGGGAGCACCCTCACCGAACGGGAGCGGGAAGTG
CTGGGCCTCATCGCCGACGGCCGCTCCAACCGGGAGATCGCGCGGGCACTGGTCCTCTCGGAGAAGACCGTCAAGACGCA
CGTCTCGAACATCCTGATGAAGCTGGACCTCTCCGACCGCACCCAGGCCGCGCTCTGGGCGGTCCGGCACGGGGCGGCGG
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.146

96.262

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407