Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   P5649_RS07815 Genome accession   NZ_CP120613
Coordinates   1514460..1515182 (+) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain DSM 23521     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1509460..1520182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS07790 (P5649_07790) degS 1509771..1510928 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  P5649_RS07795 (P5649_07795) degU 1511011..1511700 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P5649_RS07800 (P5649_07800) fakBA 1511798..1512643 (+) 846 WP_003244125.1 DegV family protein -
  P5649_RS07805 (P5649_07805) comFA 1512749..1514140 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  P5649_RS07810 (P5649_07810) comFB 1514200..1514496 (+) 297 WP_003227989.1 late competence protein ComFB -
  P5649_RS07815 (P5649_07815) comFC 1514460..1515182 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  P5649_RS07820 (P5649_07820) yvyF 1515256..1515675 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  P5649_RS07825 (P5649_07825) flgM 1515756..1516022 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5649_RS07830 (P5649_07830) flgN 1516038..1516520 (+) 483 WP_003227999.1 flagellar protein FlgN -
  P5649_RS07835 (P5649_07835) flgK 1516539..1518062 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  P5649_RS07840 (P5649_07840) flgL 1518073..1518969 (+) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  P5649_RS07845 (P5649_07845) yviE 1519016..1519591 (+) 576 WP_003243053.1 DUF6470 family protein -
  P5649_RS07850 (P5649_07850) fliW 1519612..1520043 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=806898 P5649_RS07815 WP_003227991.1 1514460..1515182(+) (comFC) [Bacillus subtilis strain DSM 23521]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=806898 P5649_RS07815 WP_003227991.1 1514460..1515182(+) (comFC) [Bacillus subtilis strain DSM 23521]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1