Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P5649_RS07795 Genome accession   NZ_CP120613
Coordinates   1511011..1511700 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain DSM 23521     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506011..1516700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS07775 (P5649_07775) tagO 1506577..1507653 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  P5649_RS07780 (P5649_07780) tagV 1507726..1508901 (-) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  P5649_RS07785 (P5649_07785) yvyE 1508901..1509554 (-) 654 WP_003227979.1 YigZ family protein -
  P5649_RS07790 (P5649_07790) degS 1509771..1510928 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  P5649_RS07795 (P5649_07795) degU 1511011..1511700 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P5649_RS07800 (P5649_07800) fakBA 1511798..1512643 (+) 846 WP_003244125.1 DegV family protein -
  P5649_RS07805 (P5649_07805) comFA 1512749..1514140 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  P5649_RS07810 (P5649_07810) comFB 1514200..1514496 (+) 297 WP_003227989.1 late competence protein ComFB -
  P5649_RS07815 (P5649_07815) comFC 1514460..1515182 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  P5649_RS07820 (P5649_07820) yvyF 1515256..1515675 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  P5649_RS07825 (P5649_07825) flgM 1515756..1516022 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5649_RS07830 (P5649_07830) flgN 1516038..1516520 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=806896 P5649_RS07795 WP_003219701.1 1511011..1511700(+) (degU) [Bacillus subtilis strain DSM 23521]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=806896 P5649_RS07795 WP_003219701.1 1511011..1511700(+) (degU) [Bacillus subtilis strain DSM 23521]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1