Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RLT59_RS20285 Genome accession   NZ_CP134612
Coordinates   4460868..4461551 (+) Length   227 a.a.
NCBI ID   WP_311304695.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4455868..4466551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS20265 (RLT59_20265) - 4456229..4457077 (+) 849 WP_311304692.1 tryptophan 2,3-dioxygenase family protein -
  RLT59_RS20270 (RLT59_20270) kynU 4457070..4458275 (+) 1206 WP_311304693.1 kynureninase -
  RLT59_RS20275 (RLT59_20275) - 4458592..4459467 (+) 876 WP_311304694.1 alpha/beta hydrolase -
  RLT59_RS20280 (RLT59_20280) - 4459627..4460871 (+) 1245 WP_311307796.1 histidine kinase -
  RLT59_RS20285 (RLT59_20285) vraR 4460868..4461551 (+) 684 WP_311304695.1 response regulator transcription factor Regulator
  RLT59_RS20290 (RLT59_20290) - 4461634..4462869 (+) 1236 WP_311304696.1 cytochrome P450 -
  RLT59_RS20295 (RLT59_20295) - 4462941..4464390 (-) 1450 Protein_4021 ABC transporter permease -
  RLT59_RS20300 (RLT59_20300) - 4464393..4465346 (-) 954 WP_311304697.1 ABC transporter ATP-binding protein -
  RLT59_RS20305 (RLT59_20305) - 4465468..4466031 (+) 564 WP_311304698.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24336.21 Da        Isoelectric Point: 4.9545

>NTDB_id=806885 RLT59_RS20285 WP_311304695.1 4460868..4461551(+) (vraR) [Streptomyces sp. ITFR-6]
MTTPTAPDAVIRVLIVDDQMMVREGFSVLLNAMPGIEVVGEAVNGREAVSQVAALRPDVVLMDIRMPELNGIEATREIVA
ADRDAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTKRLINEFSKLAAAPRPPALAR
IGDLTERETEVLVLIAQGLSNGEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPS

Nucleotide


Download         Length: 684 bp        

>NTDB_id=806885 RLT59_RS20285 WP_311304695.1 4460868..4461551(+) (vraR) [Streptomyces sp. ITFR-6]
ATGACGACCCCTACCGCCCCGGACGCGGTGATCCGGGTCCTGATCGTCGACGACCAGATGATGGTCCGCGAGGGGTTCTC
CGTGCTGCTCAACGCGATGCCGGGCATCGAGGTCGTGGGCGAGGCGGTCAACGGCCGCGAGGCGGTCTCGCAGGTCGCCG
CCCTCCGCCCCGACGTGGTGCTGATGGACATCCGGATGCCGGAGCTGAACGGGATCGAGGCGACCCGCGAGATCGTCGCC
GCCGACCGGGACGCCAAGGTGCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTCTACCAGGCGCTGCGCGCCGGCGC
GTCCGGCTTCCTCCTCAAGGACGCCTCGGCCCGGCAGCTCGCGGACGGCGTACGGGTGGTGGCCTCCGGCGAGGCGCTGC
TCGCCCCCACCGTCACCAAGCGGCTGATCAACGAGTTCTCCAAGCTCGCGGCCGCCCCGCGCCCGCCCGCGCTCGCCCGG
ATCGGTGACCTCACCGAACGCGAGACGGAGGTGCTGGTCCTCATCGCCCAGGGCCTGTCGAACGGGGAGATCGCCTCGCA
CCTGGTGGTCGCGGAGTCCACCATCAAGACCCATGTGAGCCGCATCCTGGTCAAGCTCGGCCTGCGCGACCGCACCCAGG
CGGCCGTCTTCGCCTACGAGGCCCGGCTGGTCACGCCGTCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(13-122)

Bacterial regulatory proteins, luxR family (GerE)

(164-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.393

94.273

0.419
  degU Bacillus subtilis subsp. subtilis str. 168

43.779

95.595

0.419