Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RLT59_RS16295 Genome accession   NZ_CP134612
Coordinates   3593016..3593678 (+) Length   220 a.a.
NCBI ID   WP_311304066.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3588016..3598678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS16275 (RLT59_16275) - 3588745..3590109 (-) 1365 WP_311307747.1 M1 family metallopeptidase -
  RLT59_RS16280 (RLT59_16280) - 3590290..3590886 (-) 597 WP_311304063.1 ankyrin repeat domain-containing protein -
  RLT59_RS16285 (RLT59_16285) - 3590911..3591465 (-) 555 WP_311304064.1 heme-binding protein -
  RLT59_RS16290 (RLT59_16290) - 3591697..3592944 (+) 1248 WP_311304065.1 sensor histidine kinase -
  RLT59_RS16295 (RLT59_16295) vraR 3593016..3593678 (+) 663 WP_311304066.1 response regulator transcription factor Regulator
  RLT59_RS16300 (RLT59_16300) - 3593797..3594162 (-) 366 WP_311304067.1 hypothetical protein -
  RLT59_RS16305 (RLT59_16305) - 3594177..3595424 (-) 1248 WP_399126905.1 helix-turn-helix transcriptional regulator -
  RLT59_RS16315 (RLT59_16315) - 3596284..3596811 (+) 528 Protein_3249 DinB family protein -
  RLT59_RS16320 (RLT59_16320) - 3596881..3597129 (-) 249 WP_399125529.1 transposase -
  RLT59_RS16325 (RLT59_16325) - 3597308..3598144 (-) 837 WP_311304069.1 hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23421.92 Da        Isoelectric Point: 5.7145

>NTDB_id=806876 RLT59_RS16295 WP_311304066.1 3593016..3593678(+) (vraR) [Streptomyces sp. ITFR-6]
MTAAHPPIPTPAPRPVRILLCDDHAVVRAGLLALLGSEPDIEVVGEAGSGEEAVALATRLTPDVVLMDLQLGEGIDGVEA
TRRIVSATDDAHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRSAAQGRTTLSPPVASRVMARMRKPLPTLT
DRERDILGQLSRGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 663 bp        

>NTDB_id=806876 RLT59_RS16295 WP_311304066.1 3593016..3593678(+) (vraR) [Streptomyces sp. ITFR-6]
ATGACCGCCGCGCACCCGCCCATCCCCACACCCGCCCCCAGGCCCGTCCGCATCCTGCTCTGCGACGACCACGCCGTCGT
ACGCGCCGGGCTCCTCGCCCTCCTCGGCAGCGAACCCGACATCGAGGTGGTGGGCGAGGCAGGCAGCGGCGAGGAGGCCG
TCGCCCTGGCCACCCGTCTCACCCCTGACGTCGTCCTGATGGACCTCCAGCTGGGCGAGGGCATCGACGGCGTCGAGGCG
ACCCGCCGGATCGTGTCCGCCACCGACGACGCCCACGTCCTGGTCCTCACCACGTACGACACCGACGCGGACATCACCCG
CGCCATCGAGGCCGGCGCCACCGGCTACCTGCTCAAGGCCGAACGCCCCGAGGAACTCTTCGCCGCGATCCGCTCCGCCG
CCCAGGGCCGCACCACGCTCTCACCGCCCGTCGCCAGCCGCGTCATGGCCCGCATGCGCAAACCGCTGCCCACCCTCACC
GACCGCGAACGCGACATCCTCGGCCAGCTCTCCCGGGGCCTGGGCAACCGCGACATCGCCCGCGCCCTGTTCATCAGCGA
GGCCACCGTCAAGACCCACCTGGGCCGCATCTACGACAAGCTCGGCGTCGACACCCGCGCCGGAGCGGTAGCCGTGGCGA
AGGAGCAACGGCTGCTGCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-213)

Response regulator receiver domain (Response_reg)

(18-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.904

94.545

0.377