Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RLT58_RS28320 Genome accession   NZ_CP134609
Coordinates   6386445..6387089 (+) Length   214 a.a.
NCBI ID   WP_311313198.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6381445..6392089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT58_RS28300 (RLT58_28300) - 6382233..6382994 (-) 762 WP_311313194.1 transglycosylase SLT domain-containing protein -
  RLT58_RS28305 (RLT58_28305) - 6383281..6384390 (-) 1110 WP_311313195.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  RLT58_RS28310 (RLT58_28310) - 6384387..6385094 (-) 708 WP_311313196.1 SDR family oxidoreductase -
  RLT58_RS28315 (RLT58_28315) - 6385307..6386452 (+) 1146 WP_311313197.1 GAF domain-containing sensor histidine kinase -
  RLT58_RS28320 (RLT58_28320) vraR 6386445..6387089 (+) 645 WP_311313198.1 response regulator transcription factor Regulator
  RLT58_RS28325 (RLT58_28325) - 6387237..6387488 (+) 252 WP_311313199.1 chaplin family protein -
  RLT58_RS28330 (RLT58_28330) - 6387675..6388454 (-) 780 WP_311313200.1 hypothetical protein -
  RLT58_RS28335 (RLT58_28335) - 6388612..6389409 (+) 798 WP_311313201.1 ABC transporter ATP-binding protein -
  RLT58_RS28340 (RLT58_28340) - 6389525..6389953 (+) 429 WP_311313202.1 NfeD family protein -
  RLT58_RS28345 (RLT58_28345) - 6390107..6391036 (+) 930 WP_311313203.1 SPFH domain-containing protein -
  RLT58_RS28350 (RLT58_28350) - 6391098..6391865 (+) 768 WP_311313204.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23179.46 Da        Isoelectric Point: 5.1683

>NTDB_id=806840 RLT58_RS28320 WP_311313198.1 6386445..6387089(+) (vraR) [Streptomyces sp. ITFR-16]
MADRIIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGAEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRELENPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVYAGHVLLQPEVAGALLAQDEPGSGTGRGTTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=806840 RLT58_RS28320 WP_311313198.1 6386445..6387089(+) (vraR) [Streptomyces sp. ITFR-16]
GTGGCTGACAGAATCATCAGGGTGCTGCTGGTCGACGACCATCAGGTGGTCCGCCGCGGTCTGCGTACGTTCCTGGAGAT
CCAGGACGACATCGAAGTGGTCGGCGAGGCCTCCGACGGCGCCGAGGGCGTGGCCAGGACGGAGGAGCTGCGGCCCGACG
TGGTGCTGATGGACATCAAGATGCCGGGGACCGACGGCATCGAGGCGCTGCGCCGGCTCCGCGAGCTGGAGAACCCGGCC
AAGGTGCTGATCGTCACCAGCTTCACCGAACAGCGCACGGTCGTCCCCGCCCTGCGCGCGGGCGCCTCCGGTTATGTGTA
CAAGGACGTCGACCCCGACGCGCTGGCCGGTGCGATCCGGTCGGTGTACGCGGGACACGTCCTGCTCCAGCCCGAGGTGG
CCGGCGCCCTGCTCGCCCAGGACGAGCCGGGCTCGGGCACCGGCCGGGGGACCACCCTCACCGAACGGGAGCGCGAGGTG
CTGGGGCTGATCGCCGACGGCCGCTCCAACCGGGAGATCGCGCGGGCGCTGGTCCTGTCCGAAAAGACCGTCAAGACGCA
TGTCTCGAACATCCTGATGAAGCTGGACCTCTCGGACCGCACCCAGGCGGCGCTCTGGGCCGTCCGGCACGGGGCGGCGG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.66

96.262

0.43
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407