Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RLT58_RS24815 Genome accession   NZ_CP134609
Coordinates   5615955..5617688 (-) Length   577 a.a.
NCBI ID   WP_311312567.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5610955..5622688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT58_RS24805 (RLT58_24805) - 5612822..5613919 (+) 1098 WP_311312565.1 RNA polymerase sigma factor -
  RLT58_RS24810 (RLT58_24810) - 5614024..5615955 (-) 1932 WP_311312566.1 ABC transporter ATP-binding protein -
  RLT58_RS24815 (RLT58_24815) rcrP 5615955..5617688 (-) 1734 WP_311312567.1 ABC transporter ATP-binding protein Regulator
  RLT58_RS24820 (RLT58_24820) - 5617856..5619301 (-) 1446 WP_311312568.1 FGGY family carbohydrate kinase -
  RLT58_RS24825 (RLT58_24825) - 5619369..5619671 (-) 303 WP_311314638.1 YtxH domain-containing protein -
  RLT58_RS24845 (RLT58_24845) - 5620386..5620838 (-) 453 WP_311312569.1 alpha/beta fold hydrolase -
  RLT58_RS24850 (RLT58_24850) - 5620945..5621427 (+) 483 WP_311312570.1 CGNR zinc finger domain-containing protein -
  RLT58_RS24855 (RLT58_24855) - 5621577..5622584 (-) 1008 WP_311312571.1 glycoside hydrolase family 16 protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62746.88 Da        Isoelectric Point: 5.3929

>NTDB_id=806834 RLT58_RS24815 WP_311312567.1 5615955..5617688(-) (rcrP) [Streptomyces sp. ITFR-16]
MLIKLLRAYLGPYKKPLGLLVVLQLLQTCATLYLPTLNADIIDNGVVKGDTGYILQYGGAMIVVSIAQVVCNIGAVYIGA
RTASALGRDIRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGIAVSLIVRKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDRYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLETDSSVVP
PLEPVRELRAHGHLEVRGAEFRYPGAEEPVLRAVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALLRETASATVVIVAQRVSTIREADRILVLDEGRVVGSGTHHELMDGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=806834 RLT58_RS24815 WP_311312567.1 5615955..5617688(-) (rcrP) [Streptomyces sp. ITFR-16]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAAGAAACCGCTCGGGCTGCTGGTCGTCCTCCAGTTGCTGCA
GACCTGCGCCACCCTCTATCTGCCCACCCTCAACGCCGACATCATTGACAACGGTGTCGTCAAGGGGGACACGGGTTACA
TCCTTCAGTACGGCGGCGCGATGATTGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGCGCG
CGGACCGCGTCCGCGCTCGGCCGCGACATCCGGGCGTCGGTCTTCGACCGGGTGCAGTCCTTCTCCGCGCGCGAGGTCGG
CCGGTTCGGCGCCCCCTCACTGATCACGCGTACGACCAATGACGTCCAGCAGATCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGCATCGCGGTGAGCCTCATCGTGCGGAAGATGCGCCCGCTGTTCCGGACGATGCA
GGAGCGGCTGGACACGGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGTGCCTTCGTCCGCGACC
GCTACGAGGAGGAGCGCTTCCGGGGCGCCAACACCGAGCTGACGGACGTGGCGCTGTCCACGGGCCGGCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGGGCGCACCGCATCGACAGCGG
CGGCATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCGACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCGTCCAGGAGGTCCTGGAGACCGACTCCAGCGTGGTCCCG
CCCCTGGAGCCGGTGCGCGAGCTGCGCGCCCACGGCCATCTGGAGGTGCGCGGCGCGGAGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGGCGGTGGATCTGGTGGCCCGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCCCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTGCGG
ACGCTGGATCCGGTGCTGCTGGCCAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTATCTCTTCTCCGGGACGGTCGCGAC
CAATCTGCGGTACGGGAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCCCAGGCCAAGGAGTTCG
TCGAGGCCCTGGAGCACGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGTCAGCGGCTG
TCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTGGACTACGCCACGGA
CGCCGCGCTGCGCGCGGCACTGCTGCGGGAGACCGCGAGCGCGACCGTGGTGATCGTGGCCCAGCGGGTGTCCACGATCC
GTGAGGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGCTCGGGCACCCATCACGAGCTGATGGACGGCAAT
GACACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.727

95.321

0.388