Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RLT58_RS19200 Genome accession   NZ_CP134609
Coordinates   4339438..4340115 (+) Length   225 a.a.
NCBI ID   WP_311311607.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4334438..4345115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT58_RS19180 (RLT58_19180) - 4334930..4335778 (+) 849 WP_311311603.1 tryptophan 2,3-dioxygenase family protein -
  RLT58_RS19185 (RLT58_19185) kynU 4335771..4336967 (+) 1197 WP_311311604.1 kynureninase -
  RLT58_RS19190 (RLT58_19190) - 4337144..4338019 (+) 876 WP_311311605.1 alpha/beta hydrolase -
  RLT58_RS19195 (RLT58_19195) - 4338179..4339441 (+) 1263 WP_399131911.1 sensor histidine kinase -
  RLT58_RS19200 (RLT58_19200) vraR 4339438..4340115 (+) 678 WP_311311607.1 response regulator transcription factor Regulator
  RLT58_RS19205 (RLT58_19205) - 4340173..4341408 (+) 1236 WP_311311608.1 cytochrome P450 -
  RLT58_RS19210 (RLT58_19210) - 4341487..4343112 (-) 1626 WP_311311609.1 ABC transporter permease -
  RLT58_RS19215 (RLT58_19215) - 4343109..4344035 (-) 927 WP_311311610.1 ABC transporter ATP-binding protein -
  RLT58_RS19220 (RLT58_19220) - 4344141..4344698 (+) 558 WP_311314566.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 23979.83 Da        Isoelectric Point: 4.7958

>NTDB_id=806818 RLT58_RS19200 WP_311311607.1 4339438..4340115(+) (vraR) [Streptomyces sp. ITFR-16]
MTTPAAAPIRVLIVDDQMMVREGFSVLLNAMPGIEVVGEAVDGRQAIAQVAALRPDVVLMDIRMPELNGIEATREIVAAD
ADAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAAAPRAPALAQIG
DLTERETEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPS

Nucleotide


Download         Length: 678 bp        

>NTDB_id=806818 RLT58_RS19200 WP_311311607.1 4339438..4340115(+) (vraR) [Streptomyces sp. ITFR-16]
ATGACGACCCCCGCCGCCGCACCGATCCGGGTCCTGATCGTGGACGACCAGATGATGGTCCGCGAGGGATTCTCGGTGCT
GCTCAACGCGATGCCGGGCATCGAGGTCGTCGGCGAGGCCGTCGACGGCCGCCAGGCCATCGCGCAGGTCGCCGCGCTCC
GCCCCGACGTGGTGCTGATGGACATCCGCATGCCGGAGCTCAACGGCATCGAGGCGACCCGCGAGATCGTGGCCGCCGAC
GCGGACGCCAAGGTGCTCGTGCTCACCACCTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCCGGGGCGTCCGG
CTTCCTCCTCAAGGACGCGTCGGCCCGCCAGCTGGCCGACGGGGTACGGGTGGTGGCCTCCGGCGAGGCGCTGCTCGCCC
CGACCGTCACCAGACGGCTGATCACCGAGTTCTCCAAGCTCGCGGCCGCCCCGCGCGCGCCCGCCCTCGCCCAGATCGGC
GACCTCACCGAGCGCGAGACGGAGGTGCTGGTCCTCATCGCCCAGGGCCTGTCGAACGCGGAGATCGCCTCGCACCTGGT
GGTCGCGGAGTCGACCATCAAGACCCATGTGAGCCGCATCCTGGTCAAGCTCGGTCTGCGCGACCGCACCCAGGCCGCGG
TGTTCGCCTACGAGGCCCGGCTGGTCACGCCCTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-216)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.393

95.111

0.422
  degU Bacillus subtilis subsp. subtilis str. 168

42.857

96.444

0.413