Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   RLT57_RS23810 Genome accession   NZ_CP134605
Coordinates   5302572..5304761 (+) Length   729 a.a.
NCBI ID   WP_399129259.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5297572..5309761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT57_RS23785 (RLT57_23785) - 5297805..5298038 (-) 234 WP_311299304.1 Lrp/AsnC ligand binding domain-containing protein -
  RLT57_RS23790 (RLT57_23790) - 5298209..5299174 (+) 966 WP_311299305.1 thiamine-phosphate kinase -
  RLT57_RS23795 (RLT57_23795) thiD 5299171..5300103 (+) 933 WP_311299306.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RLT57_RS23800 (RLT57_23800) rpmB 5300163..5300348 (-) 186 WP_033173090.1 50S ribosomal protein L28 -
  RLT57_RS23805 (RLT57_23805) - 5300613..5302505 (+) 1893 WP_311299307.1 DAK2 domain-containing protein -
  RLT57_RS23810 (RLT57_23810) recG 5302572..5304761 (+) 2190 WP_399129259.1 ATP-dependent DNA helicase RecG Machinery gene
  RLT57_RS23815 (RLT57_23815) rsmD 5304851..5305432 (+) 582 WP_311299309.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RLT57_RS23820 (RLT57_23820) coaD 5305468..5305947 (+) 480 WP_311299310.1 pantetheine-phosphate adenylyltransferase -
  RLT57_RS23825 (RLT57_23825) - 5305958..5307130 (+) 1173 WP_311299311.1 ATP synthase F0 subunit B -
  RLT57_RS23830 (RLT57_23830) - 5307279..5307899 (+) 621 WP_311300836.1 DUF177 domain-containing protein -
  RLT57_RS23835 (RLT57_23835) rpmF 5307902..5308075 (+) 174 WP_069465182.1 50S ribosomal protein L32 -
  RLT57_RS23840 (RLT57_23840) rnc 5308083..5308868 (+) 786 WP_399129262.1 ribonuclease III -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 77953.68 Da        Isoelectric Point: 5.9716

>NTDB_id=806773 RLT57_RS23810 WP_399129259.1 5302572..5304761(+) (recG) [Streptomyces sp. ITFR-21]
MTGNPMDEDLRKLVGDRTAKVLDEHLGLKTVGDLLHHYPRRYAERGELTRLADLPVDEYVTVVAEIAKADKRTYGGGKGV
RLEVVVTDGSGSLTLVFFSRAAHAHAHRLIPGRRGMFSGKVSVFNRTRQLAHPDYQLLDADEGEDAVDAFANRLIPLYPA
CKQITSWQIARTVDTALNSLGATGWAGVGEPLPAPLRESRGLGTLPEALEKIHRPGTKADIDAARTRLKWDEAFVLQVAL
ARRRADESALPAVPRLPRADGLLAAFDARLPFTLTGGQRTVSAEIFADLATEHPMHRLLQGEVGSGKTLVALRAMLGVVD
AGGQAALLAPTEVLAQQHHRSVTEMMGDLAQAGMLGGADLGTKVVLLTGSTGTAARRRALLDLVTGEAGIVIGTHALIED
TVRFHDLGLVVVDEQHRFGVEQRDALRAKGGQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAAD
KPHFLARAWERVREEVGAGHQAYVVCPRIGDDEDTGRKQPDDGERRPPLAVLETAGQLAAGPLAGLRVEVLHGRMAADAK
DEVMRRFTAGEADVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAPEAGPARARLDA
VAATLDGFALSRIDLEQRREGDVLGQAQSGSRSSLRVLTVMDDEDVIAAARDEATAVVGADPELTAHPDLRSALDSLLDA
DREEYLDKG

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=806773 RLT57_RS23810 WP_399129259.1 5302572..5304761(+) (recG) [Streptomyces sp. ITFR-21]
ATGACCGGCAACCCCATGGACGAAGACCTCCGCAAGCTCGTCGGCGACCGCACCGCGAAGGTGCTGGACGAGCACCTCGG
GCTGAAGACCGTCGGCGACCTGCTGCACCACTACCCGCGGCGGTACGCCGAGCGCGGCGAGCTGACCCGGCTCGCCGACC
TCCCCGTGGACGAGTACGTGACCGTGGTCGCGGAGATCGCCAAGGCGGACAAGCGGACGTACGGCGGCGGCAAGGGCGTT
CGGCTGGAGGTGGTGGTCACCGACGGCAGCGGCTCGCTGACCCTGGTGTTCTTCAGCCGGGCCGCCCACGCGCACGCCCA
CCGGCTCATCCCGGGGCGGCGCGGGATGTTCTCCGGGAAGGTGTCCGTCTTCAACCGGACCCGGCAGCTCGCCCACCCCG
ACTACCAGCTGCTGGACGCCGACGAGGGCGAGGACGCGGTCGACGCCTTCGCCAACCGGCTGATCCCGCTGTACCCGGCG
TGCAAGCAGATCACCTCCTGGCAGATCGCCCGGACCGTGGACACCGCGCTGAACTCACTGGGCGCCACCGGGTGGGCCGG
GGTCGGGGAGCCGCTGCCCGCACCGCTGCGCGAGAGCCGGGGGCTGGGCACCCTCCCCGAGGCGCTGGAGAAGATCCACC
GGCCGGGCACGAAGGCCGACATCGACGCCGCCAGGACCCGGCTGAAGTGGGACGAGGCGTTCGTCCTCCAGGTCGCGCTG
GCCCGCCGGCGCGCCGACGAGTCCGCGCTGCCCGCGGTGCCCCGGCTGCCGCGCGCCGACGGACTGCTCGCCGCCTTCGA
CGCGCGGCTGCCGTTCACCCTCACCGGCGGTCAGCGGACGGTCAGCGCGGAGATCTTCGCCGACCTGGCCACCGAGCACC
CGATGCACCGGCTGCTGCAGGGGGAGGTCGGCTCCGGCAAGACGCTGGTCGCGCTGCGGGCGATGCTCGGCGTGGTCGAC
GCGGGCGGGCAGGCCGCGCTGCTCGCCCCCACCGAGGTGCTGGCGCAGCAGCACCACCGGTCGGTCACCGAGATGATGGG
CGACCTCGCGCAGGCCGGCATGCTCGGCGGCGCCGACCTCGGCACGAAGGTCGTGCTGCTGACCGGCTCGACCGGCACCG
CCGCCCGCCGCCGGGCACTGCTGGACCTGGTGACCGGCGAGGCCGGGATCGTCATCGGCACCCACGCGCTGATCGAGGAC
ACGGTGCGCTTCCACGACCTGGGCCTGGTGGTCGTCGACGAGCAGCACCGCTTCGGGGTGGAGCAGCGGGACGCGCTGCG
CGCCAAGGGCGGTCAGCCGCCGCACCTGCTGGTGATGACCGCCACCCCGATCCCGCGGACGGTCGCCATGACCGTCTTCG
GGGACCTGGAGACCTCCGTCCTGGACCAGCTGCCCGCCGGCCGCTCGCCGATCGCCACCCACGTCGTACCGGCCGCGGAC
AAGCCGCACTTCCTGGCCCGCGCCTGGGAGCGGGTCCGGGAGGAGGTCGGGGCCGGACACCAGGCGTACGTGGTCTGCCC
GCGGATCGGCGACGACGAGGACACCGGGAGGAAGCAGCCGGACGACGGCGAGCGCAGGCCGCCGCTGGCCGTGCTGGAGA
CCGCCGGGCAGCTCGCCGCCGGCCCGCTGGCCGGGCTCCGGGTCGAGGTGCTGCACGGCAGGATGGCCGCCGACGCCAAG
GACGAGGTGATGCGCCGCTTCACCGCCGGCGAGGCCGACGTCCTGGTGGCCACCACCGTCATCGAGGTCGGCGTGAACGT
ACCCAACGCCACCGCGATGGTGATCATGGACGCGGACCGGTTCGGCGTCTCCCAACTGCACCAGCTGCGCGGCCGGGTCG
GCCGCGGCTCCGCGCCCGGCCTGTGCCTGCTGGTCTCCGAGGCGCCCGAGGCCGGCCCCGCCCGGGCCCGGCTGGACGCC
GTGGCCGCCACCCTGGACGGCTTCGCGCTGTCCCGGATCGACCTCGAACAGCGCCGTGAGGGCGATGTGCTGGGCCAGGC
CCAGTCCGGCAGCCGCTCCTCGCTGCGGGTACTGACCGTCATGGACGACGAGGACGTCATCGCCGCCGCCCGGGACGAGG
CCACCGCCGTGGTCGGCGCCGACCCGGAACTGACCGCGCACCCCGACCTGCGCAGCGCCCTGGACAGCCTGCTGGACGCC
GACCGCGAGGAGTACCTCGACAAGGGGTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(644-706)

Helicase conserved C-terminal domain (Helicase_C)

(545-616)

DEAD/DEAH box helicase (DEAD)

(297-448)

RecG wedge domain (RecG_wedge)

(12-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

37.765

96.982

0.366
  recG Neisseria meningitidis strain C311

37.857

96.022

0.364