Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RLT57_RS04940 Genome accession   NZ_CP134605
Coordinates   1095604..1096248 (-) Length   214 a.a.
NCBI ID   WP_311296131.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-21     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1090604..1101248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT57_RS04915 (RLT57_04915) - 1091376..1092338 (-) 963 WP_311296128.1 SPFH domain-containing protein -
  RLT57_RS04920 (RLT57_04920) - 1092478..1092909 (-) 432 WP_311300577.1 NfeD family protein -
  RLT57_RS04925 (RLT57_04925) - 1093030..1093839 (-) 810 WP_311300578.1 ABC transporter ATP-binding protein -
  RLT57_RS04930 (RLT57_04930) - 1093945..1094733 (+) 789 WP_311296129.1 hypothetical protein -
  RLT57_RS04935 (RLT57_04935) - 1095121..1095360 (-) 240 WP_311296130.1 chaplin -
  RLT57_RS04940 (RLT57_04940) vraR 1095604..1096248 (-) 645 WP_311296131.1 response regulator transcription factor Regulator
  RLT57_RS04945 (RLT57_04945) - 1096241..1097338 (-) 1098 WP_311300579.1 GAF domain-containing sensor histidine kinase -
  RLT57_RS04950 (RLT57_04950) - 1097843..1098712 (+) 870 WP_311296132.1 lytic transglycosylase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22937.15 Da        Isoelectric Point: 5.5962

>NTDB_id=806738 RLT57_RS04940 WP_311296131.1 1095604..1096248(-) (vraR) [Streptomyces sp. ITFR-21]
MADQVIRVLLVDDHQVVRRGLRTFLEVQGDIEVVGEAADGDEGVARAEELRPDVILMDVKMPGTDGIEALRLLHEAGNPA
RVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPVALADAIRSVHAGHVLLQPEVAGALLAQDHHGTGTGRGNTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRNGAGG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=806738 RLT57_RS04940 WP_311296131.1 1095604..1096248(-) (vraR) [Streptomyces sp. ITFR-21]
GTGGCTGACCAGGTGATCCGCGTCCTGCTGGTCGACGACCACCAGGTGGTGCGCCGCGGGCTGCGCACCTTCCTGGAGGT
GCAGGGCGACATCGAGGTCGTCGGCGAGGCCGCCGACGGCGACGAGGGCGTGGCCCGCGCCGAGGAGCTGCGGCCGGACG
TCATCCTGATGGACGTCAAGATGCCCGGCACCGACGGCATCGAGGCGCTGCGGCTGCTGCATGAGGCCGGCAACCCGGCC
CGGGTGCTGATCGTGACCAGCTTCACCGAGCAGCGGACCGTGGTGCCCGCGCTGCGGGCCGGCGCCGCCGGATACGTCTA
CAAGGACGTCGATCCGGTCGCCCTGGCCGACGCGATCCGCTCGGTGCACGCCGGACACGTGCTGCTCCAGCCGGAAGTGG
CCGGCGCGCTGCTCGCCCAGGACCACCACGGCACCGGCACCGGCCGCGGCAACACCCTCACCGAACGGGAGCGCGAGGTG
CTCGGCCTGATCGCCGACGGCCGCTCCAACCGGGAGATCGCCCGCGCGCTGGTGCTCTCCGAGAAGACCGTGAAGACCCA
CGTGTCCAACATCCTCATGAAGCTGGATCTCGCCGACCGCACCCAGGCGGCGCTGTGGGCGGTACGCAACGGGGCCGGCG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.631

96.262

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.393