Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   P5637_RS15265 Genome accession   NZ_CP120601
Coordinates   2935072..2936229 (-) Length   385 a.a.
NCBI ID   WP_020453119.1    Uniprot ID   A0A6I7TVP7
Organism   Bacillus paralicheniformis strain PRO109     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2930072..2941229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5637_RS15235 (P5637_15235) - 2930310..2930729 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  P5637_RS15240 (P5637_15240) comFC 2930788..2931525 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  P5637_RS15245 (P5637_15245) - 2931482..2931766 (-) 285 WP_145685822.1 late competence development ComFB family protein -
  P5637_RS15250 (P5637_15250) comFA 2931821..2933215 (-) 1395 WP_023856393.1 DEAD/DEAH box helicase Machinery gene
  P5637_RS15255 (P5637_15255) - 2933339..2934181 (-) 843 WP_020453118.1 DegV family protein -
  P5637_RS15260 (P5637_15260) degU 2934301..2934990 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  P5637_RS15265 (P5637_15265) degS 2935072..2936229 (-) 1158 WP_020453119.1 histidine kinase Regulator
  P5637_RS15270 (P5637_15270) - 2936452..2937090 (+) 639 WP_023856394.1 YigZ family protein -
  P5637_RS15275 (P5637_15275) - 2937105..2938184 (+) 1080 WP_023856395.1 LCP family protein -
  P5637_RS15280 (P5637_15280) - 2938237..2938620 (-) 384 WP_023856396.1 hypothetical protein -
  P5637_RS15285 (P5637_15285) - 2938729..2939794 (-) 1066 Protein_3024 MraY family glycosyltransferase -
  P5637_RS15290 (P5637_15290) - 2939925..2941112 (-) 1188 WP_023856398.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44650.34 Da        Isoelectric Point: 6.7862

>NTDB_id=806668 P5637_RS15265 WP_020453119.1 2935072..2936229(-) (degS) [Bacillus paralicheniformis strain PRO109]
MSVSKMDSKVLDSIIMKMLKTVDGSKDEVFQIGEQSRQQYEGLVEELKQIKQQVNEVIDLGDRLEVHARHARNRLSEVSR
NFHKFSEEEIREAYEKAHKLQVELTMIQQREKQLREKRDDLERRLLGLQEIIERSEGLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDKGTEEGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEDYHGKAKIHFQCIGESEDRRIAPRFEVALFRLAQEAVTNALKHSESTEIHVKVEV
TKDFVTLIIKDNGNGFDLKEVKGKKNKSFGLLGMKERVDLLEGSMTIDSKIGLGTFILIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=806668 P5637_RS15265 WP_020453119.1 2935072..2936229(-) (degS) [Bacillus paralicheniformis strain PRO109]
GTGAGTGTTTCCAAAATGGACTCCAAAGTTTTAGATTCAATCATTATGAAGATGTTAAAAACGGTTGACGGGAGCAAGGA
TGAGGTCTTTCAAATCGGAGAGCAGTCCCGTCAGCAATATGAAGGCTTGGTAGAAGAGCTGAAGCAGATTAAACAGCAGG
TCAACGAAGTCATCGATCTTGGAGACAGGCTGGAAGTGCATGCCCGCCATGCGCGAAACCGCTTGTCTGAGGTCAGCAGA
AACTTTCATAAATTCAGTGAAGAAGAGATTCGCGAAGCTTATGAAAAAGCCCACAAACTGCAGGTTGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGAGAGAGAAGCGTGATGATCTGGAACGGCGCCTTTTGGGGCTTCAGGAAATCATCGAGC
GTTCAGAAGGGCTTGTCAGCCAGATTACCGTCGTCTTAAACTATTTAAATCAGGATCTGCGCCAGGTTGGCGTTCTCCTA
GAAGATGCGCAGGCCAAACAGGATTTCGGACTGCGGATCATCGAAGCCCAAGAGGAAGAAAGAAAAAGGGTCTCAAGGGA
AATCCACGACGGCCCTGCGCAAATGCTGGCCAACGTCATGATGAGATCTGAGCTGATCGAACGCATCTTCAGAGACAAAG
GAACAGAAGAAGGCTTTCAGGAAATTAGAAACCTCCGGCAAAACGTCAGAAATGCTCTTTATGAAGTCAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGACGATTTGGGATTAATACCGACGCTCAGAAAATACTTGAACACGATCGAAGATTA
TCATGGAAAAGCAAAGATCCATTTCCAATGCATCGGAGAATCTGAAGATAGAAGAATAGCACCGCGGTTTGAGGTTGCAC
TTTTCCGTCTTGCACAGGAAGCAGTGACAAACGCCTTAAAACACTCCGAATCAACTGAGATTCATGTTAAAGTAGAAGTG
ACAAAAGATTTTGTGACGTTGATTATCAAAGACAATGGAAACGGCTTTGACTTAAAAGAAGTTAAAGGCAAGAAGAACAA
ATCTTTCGGTCTGCTAGGTATGAAAGAAAGAGTCGACTTGCTCGAAGGTTCAATGACAATCGATTCGAAAATAGGTCTTG
GGACATTTATTTTGATTAAAGTTCCGCTGTCTTTGTAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(292-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7TVP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

89.351

100

0.894