Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P5637_RS15260 Genome accession   NZ_CP120601
Coordinates   2934301..2934990 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain PRO109     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2929301..2939990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5637_RS15225 (P5637_15225) - 2929469..2929945 (-) 477 WP_025810700.1 flagellar protein FlgN -
  P5637_RS15230 (P5637_15230) flgM 2929964..2930230 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5637_RS15235 (P5637_15235) - 2930310..2930729 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  P5637_RS15240 (P5637_15240) comFC 2930788..2931525 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  P5637_RS15245 (P5637_15245) - 2931482..2931766 (-) 285 WP_145685822.1 late competence development ComFB family protein -
  P5637_RS15250 (P5637_15250) comFA 2931821..2933215 (-) 1395 WP_023856393.1 DEAD/DEAH box helicase Machinery gene
  P5637_RS15255 (P5637_15255) - 2933339..2934181 (-) 843 WP_020453118.1 DegV family protein -
  P5637_RS15260 (P5637_15260) degU 2934301..2934990 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  P5637_RS15265 (P5637_15265) degS 2935072..2936229 (-) 1158 WP_020453119.1 histidine kinase Regulator
  P5637_RS15270 (P5637_15270) - 2936452..2937090 (+) 639 WP_023856394.1 YigZ family protein -
  P5637_RS15275 (P5637_15275) - 2937105..2938184 (+) 1080 WP_023856395.1 LCP family protein -
  P5637_RS15280 (P5637_15280) - 2938237..2938620 (-) 384 WP_023856396.1 hypothetical protein -
  P5637_RS15285 (P5637_15285) - 2938729..2939794 (-) 1066 Protein_3024 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=806667 P5637_RS15260 WP_003185730.1 2934301..2934990(-) (degU) [Bacillus paralicheniformis strain PRO109]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=806667 P5637_RS15260 WP_003185730.1 2934301..2934990(-) (degU) [Bacillus paralicheniformis strain PRO109]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGATGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACCAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987