Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   P5661_RS19475 Genome accession   NZ_CP120600
Coordinates   3666908..3668065 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain PRO112     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3661908..3673065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS19445 (P5661_19445) yvyF 3662162..3662581 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  P5661_RS19450 (P5661_19450) comFC 3662654..3663376 (-) 723 WP_032726962.1 comF operon protein ComFC Machinery gene
  P5661_RS19455 (P5661_19455) comFB 3663340..3663636 (-) 297 WP_003227989.1 late competence protein ComFB -
  P5661_RS19460 (P5661_19460) comFA 3663696..3665087 (-) 1392 WP_249852325.1 ATP-dependent helicase ComFA Machinery gene
  P5661_RS19465 (P5661_19465) fakBA 3665193..3666038 (-) 846 WP_003244125.1 DegV family protein -
  P5661_RS19470 (P5661_19470) degU 3666136..3666825 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P5661_RS19475 (P5661_19475) degS 3666908..3668065 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  P5661_RS19480 (P5661_19480) yvyE 3668282..3668935 (+) 654 WP_003227979.1 YigZ family protein -
  P5661_RS19485 (P5661_19485) tagV 3668935..3670101 (+) 1167 WP_277709074.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  P5661_RS19490 (P5661_19490) tagO 3670172..3671248 (-) 1077 WP_032726968.1 MraY family glycosyltransferase -
  P5661_RS19495 (P5661_19495) tuaH 3671393..3672586 (-) 1194 WP_080286269.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=806604 P5661_RS19475 WP_003227983.1 3666908..3668065(-) (degS) [Bacillus subtilis strain PRO112]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=806604 P5661_RS19475 WP_003227983.1 3666908..3668065(-) (degS) [Bacillus subtilis strain PRO112]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGGATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1