Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P5661_RS19470 Genome accession   NZ_CP120600
Coordinates   3666136..3666825 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain PRO112     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3661136..3671825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS19435 (P5661_19435) flgN 3661317..3661799 (-) 483 WP_014481048.1 flagellar protein FlgN -
  P5661_RS19440 (P5661_19440) flgM 3661815..3662081 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5661_RS19445 (P5661_19445) yvyF 3662162..3662581 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  P5661_RS19450 (P5661_19450) comFC 3662654..3663376 (-) 723 WP_032726962.1 comF operon protein ComFC Machinery gene
  P5661_RS19455 (P5661_19455) comFB 3663340..3663636 (-) 297 WP_003227989.1 late competence protein ComFB -
  P5661_RS19460 (P5661_19460) comFA 3663696..3665087 (-) 1392 WP_249852325.1 ATP-dependent helicase ComFA Machinery gene
  P5661_RS19465 (P5661_19465) fakBA 3665193..3666038 (-) 846 WP_003244125.1 DegV family protein -
  P5661_RS19470 (P5661_19470) degU 3666136..3666825 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P5661_RS19475 (P5661_19475) degS 3666908..3668065 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  P5661_RS19480 (P5661_19480) yvyE 3668282..3668935 (+) 654 WP_003227979.1 YigZ family protein -
  P5661_RS19485 (P5661_19485) tagV 3668935..3670101 (+) 1167 WP_277709074.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  P5661_RS19490 (P5661_19490) tagO 3670172..3671248 (-) 1077 WP_032726968.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=806603 P5661_RS19470 WP_003219701.1 3666136..3666825(-) (degU) [Bacillus subtilis strain PRO112]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=806603 P5661_RS19470 WP_003219701.1 3666136..3666825(-) (degU) [Bacillus subtilis strain PRO112]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCGGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAATCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1