Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P5661_RS11850 Genome accession   NZ_CP120600
Coordinates   2259190..2259810 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO112     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2254190..2264810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS11810 (P5661_11810) ypqE 2255320..2255826 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  P5661_RS11815 (P5661_11815) ypqA 2255964..2256383 (+) 420 WP_038828605.1 Hsp20/alpha crystallin family protein -
  P5661_RS11820 (P5661_11820) yppG 2256404..2256781 (-) 378 WP_015251832.1 YppG family protein -
  P5661_RS11825 (P5661_11825) yppF 2256969..2257157 (+) 189 WP_003230690.1 YppF family protein -
  P5661_RS11830 (P5661_11830) yppE 2257197..2257568 (-) 372 WP_021481525.1 YppE family protein -
  P5661_RS11835 (P5661_11835) yppD 2257614..2257859 (-) 246 WP_277708763.1 YppD family protein -
  P5661_RS11840 (P5661_11840) sspM 2258058..2258162 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  P5661_RS11845 (P5661_11845) yppC 2258187..2259149 (-) 963 WP_064671082.1 DUF2515 domain-containing protein -
  P5661_RS11850 (P5661_11850) recU 2259190..2259810 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  P5661_RS11855 (P5661_11855) ponA 2259832..2262591 (+) 2760 WP_277708764.1 PBP1A family penicillin-binding protein -
  P5661_RS11860 (P5661_11860) ypoC 2262669..2263163 (-) 495 WP_120028311.1 YpoC family protein -
  P5661_RS11865 (P5661_11865) nth 2263160..2263819 (-) 660 WP_009967580.1 endonuclease III -
  P5661_RS11870 (P5661_11870) dnaD 2263838..2264536 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=806573 P5661_RS11850 WP_004399067.1 2259190..2259810(+) (recU) [Bacillus subtilis strain PRO112]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=806573 P5661_RS11850 WP_004399067.1 2259190..2259810(+) (recU) [Bacillus subtilis strain PRO112]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1