Detailed information NTG0806313

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RKQ52_RS05475
• Genome accession: NZ_CP134594
• Coordinates: 955941..956945 (-)
• Length: 334 a.a.
• NCBI ID: WP_001154002.1
• Uniprot ID: A3M7W1
• Organism: Acinetobacter baumannii strain XH1019
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 950941..961945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ52_RS05450 (RKQ52_05460)	tolA	951260..952606 (-)	1347	WP_001039143.1	cell envelope integrity protein TolA	-
RKQ52_RS05455 (RKQ52_05465)	tolR	952610..953062 (-)	453	WP_001007562.1	protein TolR	-
RKQ52_RS05460 (RKQ52_05470)	tolQ	953062..953760 (-)	699	WP_000224630.1	protein TolQ	-
RKQ52_RS05465 (RKQ52_05475)	ybgC	953784..954191 (-)	408	WP_001273591.1	tol-pal system-associated acyl-CoA thioesterase	-
RKQ52_RS05470 (RKQ52_05480)	-	954402..955736 (-)	1335	WP_000276845.1	M20 family metallopeptidase	-
RKQ52_RS05475 (RKQ52_05485)	ruvB	955941..956945 (-)	1005	WP_001154002.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RKQ52_RS05480 (RKQ52_05490)	ruvA	956954..957553 (-)	600	WP_000578660.1	Holliday junction branch migration protein RuvA	-
RKQ52_RS05485 (RKQ52_05495)	-	957645..958985 (-)	1341	WP_000437078.1	deoxyguanosinetriphosphate triphosphohydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36815.05 Da
• Isoelectric Point: 4.7936

>NTDB_id=806313 RKQ52_RS05475 WP_001154002.1 955941..956945(-) (ruvB) [Acinetobacter baumannii strain XH1019]
MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNL
KSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTR
AGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN
HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQ
SYLQFGMTPPEPKN

Nucleotide

• Length: 1005 bp

>NTDB_id=806313 RKQ52_RS05475 WP_001154002.1 955941..956945(-) (ruvB) [Acinetobacter baumannii strain XH1019]
ATGCAAGACCGTCTAATCAGTGGAACAGAAAAACCTGAAGATCATTTTGATCGGGCTATTCGACCGACGTCACTTGCCGA
TTATATCGGGCAACCAGTCGTACGCGAGCAAATGGAAATTTTCATCGGTGCGGCTCGTGGTCGTGGTGAGGCACTCGATC
ACACACTGATTTTCGGTCCACCGGGCTTAGGAAAAACTACGCTTGCCAATATTATTGCGCGTGAAATGGGTGGCAATCTC
AAATCCACTTCAGGGCCTGTTTTAGAGCGTGCGGGTGATTTGGCTGCAATGCTGACTAACCTTGAAGAAGGCGATGTTTT
ATTTATTGATGAGATTCATCGTCTTTCACCAGTGATTGAAGAAATCCTCTATCCAGCAATGGAAGATTACCAACTCGATA
TCATGATTGGTGAAGGCCCTGCTGCCCGTTCAATTAAACTAGATTTACCCCCTTTTACACTTGTTGCTGCGACCACACGT
GCCGGCTTACTCACCTCGCCTCTACGTGACCGTTTCGGTATTGTGCAACGTCTTGAATTCTATTCTGTAGAAGACTTAAC
TCACATCGTGTCACGATCTGCAAACCTCATGGATGTACCCATTACAGTTGAGGGTGCAGAAGAAGTTGCACGCCGTTCAC
GCGGAACACCGCGTATTGCCAATCGTTTATTACGCCGTGTACGTGACTATGCACAAGTAAAAGGTACAGGCGAAGTTAAC
CATGAAATGGCACAACGTGCGCTTGATATGCTTAATGTCGATAAAGCTGGTTTAGATACCTTAGACCGACGTTATTTAAG
TATGTTGTTAGAACGTTTTGATGGTGGACCTGCTGGTGTTGAAGCCCTTGCAGCTGCTATGGCTGAAGATAGCGGAACAC
TTGAAGATGTTATTGAACCTTATTTAATTCAGCAAGGTTATGTTATGCGTACTGCACGAGGTCGCATTGCAACCAACCAA
TCTTATTTGCAGTTTGGCATGACGCCACCTGAGCCTAAAAACTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-322)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• AlphaFold DB: A3M7W1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	57.704	99.102	0.572
ruvB	Synechocystis sp. PCC 6803	57.325	94.012	0.539
ruvB	Streptococcus pneumoniae TIGR4	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae R6	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae D39	56.113	95.509	0.536
ruvB	Helicobacter pylori 26695	54.934	91.018	0.5