Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   P5628_RS12380 Genome accession   NZ_CP120577
Coordinates   2386868..2387938 (-) Length   356 a.a.
NCBI ID   WP_032726161.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO53     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2381868..2392938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS12335 (P5628_12335) tapA 2382347..2383108 (-) 762 WP_277708795.1 amyloid fiber anchoring/assembly protein TapA -
  P5628_RS12340 (P5628_12340) yqzG 2383379..2383705 (+) 327 WP_021480018.1 YqzG/YhdC family protein -
  P5628_RS12345 (P5628_12345) spoIIT 2383747..2383926 (-) 180 WP_014480252.1 YqzE family protein -
  P5628_RS12350 (P5628_12350) comGG 2383998..2384372 (-) 375 WP_064671036.1 ComG operon protein ComGG Machinery gene
  P5628_RS12355 (P5628_12355) comGF 2384373..2384756 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  P5628_RS12360 (P5628_12360) comGE 2384782..2385129 (-) 348 WP_063335293.1 ComG operon protein 5 Machinery gene
  P5628_RS12365 (P5628_12365) comGD 2385113..2385544 (-) 432 WP_163136251.1 comG operon protein ComGD Machinery gene
  P5628_RS12370 (P5628_12370) comGC 2385534..2385830 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  P5628_RS12375 (P5628_12375) comGB 2385844..2386881 (-) 1038 WP_163136249.1 comG operon protein ComGB Machinery gene
  P5628_RS12380 (P5628_12380) comGA 2386868..2387938 (-) 1071 WP_032726161.1 competence protein ComGA Machinery gene
  P5628_RS12385 (P5628_12385) - 2388150..2388347 (-) 198 WP_032726162.1 hypothetical protein -
  P5628_RS12390 (P5628_12390) corA 2388349..2389303 (-) 955 Protein_2395 magnesium transporter CorA -
  P5628_RS12395 (P5628_12395) yqhB 2389446..2390774 (+) 1329 WP_277708796.1 hemolysin family protein -
  P5628_RS12400 (P5628_12400) rsbRD 2390827..2391663 (-) 837 WP_021480027.1 RsbT co-antagonist protein RsbRD -
  P5628_RS12410 (P5628_12410) mgsR 2391887..2392267 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  P5628_RS12415 (P5628_12415) yqgY 2392499..2392744 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40431.62 Da        Isoelectric Point: 9.0175

>NTDB_id=806313 P5628_RS12380 WP_032726161.1 2386868..2387938(-) (comGA) [Bacillus subtilis strain PRO53]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQSGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=806313 P5628_RS12380 WP_032726161.1 2386868..2387938(-) (comGA) [Bacillus subtilis strain PRO53]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAGCGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCTGCAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCCATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACCAGGAGAGCTAGTGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.719

100

0.997