Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   P5628_RS12320 Genome accession   NZ_CP120577
Coordinates   2380514..2380849 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain PRO53     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2375514..2385849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS12300 (P5628_12300) gcvT 2376105..2377193 (-) 1089 WP_038829737.1 glycine cleavage system aminomethyltransferase GcvT -
  P5628_RS12305 (P5628_12305) yqhH 2377635..2379308 (+) 1674 WP_038829735.1 SNF2-related protein -
  P5628_RS12310 (P5628_12310) yqhG 2379329..2380123 (+) 795 WP_021480015.1 YqhG family protein -
  P5628_RS12315 (P5628_12315) sinI 2380307..2380480 (+) 174 WP_014477323.1 anti-repressor SinI family protein Regulator
  P5628_RS12320 (P5628_12320) sinR 2380514..2380849 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  P5628_RS12325 (P5628_12325) tasA 2380941..2381726 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  P5628_RS12330 (P5628_12330) sipW 2381791..2382363 (-) 573 WP_086344613.1 signal peptidase I -
  P5628_RS12335 (P5628_12335) tapA 2382347..2383108 (-) 762 WP_277708795.1 amyloid fiber anchoring/assembly protein TapA -
  P5628_RS12340 (P5628_12340) yqzG 2383379..2383705 (+) 327 WP_021480018.1 YqzG/YhdC family protein -
  P5628_RS12345 (P5628_12345) spoIIT 2383747..2383926 (-) 180 WP_014480252.1 YqzE family protein -
  P5628_RS12350 (P5628_12350) comGG 2383998..2384372 (-) 375 WP_064671036.1 ComG operon protein ComGG Machinery gene
  P5628_RS12355 (P5628_12355) comGF 2384373..2384756 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  P5628_RS12360 (P5628_12360) comGE 2384782..2385129 (-) 348 WP_063335293.1 ComG operon protein 5 Machinery gene
  P5628_RS12365 (P5628_12365) comGD 2385113..2385544 (-) 432 WP_163136251.1 comG operon protein ComGD Machinery gene
  P5628_RS12370 (P5628_12370) comGC 2385534..2385830 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=806306 P5628_RS12320 WP_003226345.1 2380514..2380849(+) (sinR) [Bacillus subtilis strain PRO53]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=806306 P5628_RS12320 WP_003226345.1 2380514..2380849(+) (sinR) [Bacillus subtilis strain PRO53]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1