Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   P3T66_RS02660 Genome accession   NZ_CP120512
Coordinates   534301..534729 (+) Length   142 a.a.
NCBI ID   WP_151384770.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain PMC104     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 529301..539729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T66_RS02645 (P3T66_02645) - 530879..531967 (+) 1089 WP_035144637.1 glycosyltransferase family 4 protein -
  P3T66_RS02650 (P3T66_02650) - 531994..532659 (-) 666 WP_025016329.1 YigZ family protein -
  P3T66_RS02655 (P3T66_02655) comFA 532721..534058 (+) 1338 WP_277576167.1 DEAD/DEAH box helicase Machinery gene
  P3T66_RS02660 (P3T66_02660) comFC 534301..534729 (+) 429 WP_151384770.1 ComF family protein Machinery gene
  P3T66_RS02665 (P3T66_02665) hpf 534856..535401 (+) 546 WP_011374202.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  P3T66_RS02670 (P3T66_02670) secA 535650..538013 (+) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  P3T66_RS02675 (P3T66_02675) prfB 538083..539199 (+) 1117 WP_099049013.1 peptide chain release factor 2 -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16619.07 Da        Isoelectric Point: 10.2048

>NTDB_id=805975 P3T66_RS02660 WP_151384770.1 534301..534729(+) (comFC) [Latilactobacillus sakei strain PMC104]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASPQFFELVPQKLPHKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=805975 P3T66_RS02660 WP_151384770.1 534301..534729(+) (comFC) [Latilactobacillus sakei strain PMC104]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGTTATTGAAAAAGCGGCCGACAGAGAAGGGTCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTCCGCAATTTTTTGAATTGGTACCGCAAAAATTACCGCATAAGCCGCAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAGCTA
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

97.183

100

0.972
  comFC Lactococcus lactis subsp. cremoris KW2

36.62

100

0.366