Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P3R60_RS07995 Genome accession   NZ_CP120510
Coordinates   1543313..1543801 (+) Length   162 a.a.
NCBI ID   WP_104968488.1    Uniprot ID   A0A2L0D669
Organism   Streptococcus pluranimalium strain SP21-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1538313..1548801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS07970 - 1539260..1539901 (+) 642 WP_218653647.1 HAD family phosphatase -
  P3R60_RS07975 mutY 1539933..1541081 (-) 1149 WP_218653646.1 A/G-specific adenine glycosylase -
  P3R60_RS07980 - 1541137..1541544 (-) 408 WP_218653645.1 hypothetical protein -
  P3R60_RS07990 rpsF 1543011..1543301 (+) 291 WP_104968489.1 30S ribosomal protein S6 -
  P3R60_RS07995 ssb 1543313..1543801 (+) 489 WP_104968488.1 single-stranded DNA-binding protein Machinery gene
  P3R60_RS08000 rpsR 1543839..1544078 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  P3R60_RS08005 - 1544677..1545678 (+) 1002 WP_316606168.1 isocitrate/isopropylmalate family dehydrogenase -
  P3R60_RS08010 - 1545688..1546980 (+) 1293 WP_218653643.1 CitMHS family transporter -
  P3R60_RS08015 - 1547126..1547797 (-) 672 WP_218653641.1 DUF1129 domain-containing protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17971.63 Da        Isoelectric Point: 4.7187

>NTDB_id=805866 P3R60_RS07995 WP_104968488.1 1543313..1543801(+) (ssb) [Streptococcus pluranimalium strain SP21-2]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSQSSYNGGGYNNQSSNDAFSSSSQTPNFGRDESPFGNSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=805866 P3R60_RS07995 WP_104968488.1 1543313..1543801(+) (ssb) [Streptococcus pluranimalium strain SP21-2]
ATGATTAATAATGTAGTACTTGTTGGTCGTATGACCAGAGATGCAGAACTTCGTTACACACCGAGCAATGTAGCAGTAGC
TACTTTCTCTCTTGCAGTTAACCGTAACTTCAAGAGTCAAAACGGTGAACGTGAAGCTGATTTCATTAATTGTGTGATTT
GGCGCCAGCCAGCCGAGAATTTGGCTAACTGGGCTAAAAAAGGTGCCTTAATCGGTATCACTGGACGTATTCAGACACGT
AATTATGAAAATCAACAAGGCCAACGTGTTTACGTAACAGAAGTTGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCACAAAGTTCATACAATGGTGGTGGCTATAATAACCAATCATCAAACGATGCTTTCTCATCTT
CATCACAAACACCAAACTTTGGTCGAGACGAGAGTCCGTTTGGTAACTCAAACCCAATGGATATCTCAGATGACGATCTA
CCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0D669

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.63
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.591

100

0.599