Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   P3R60_RS04225 Genome accession   NZ_CP120510
Coordinates   847625..848671 (-) Length   348 a.a.
NCBI ID   WP_316606705.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 842625..853671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS04215 - 845478..846398 (+) 921 Protein_821 IS30 family transposase -
  P3R60_RS04220 amiF 846690..847625 (-) 936 WP_316606704.1 ATP-binding cassette domain-containing protein Regulator
  P3R60_RS04225 oppD 847625..848671 (-) 1047 WP_316606705.1 ABC transporter ATP-binding protein Regulator
  P3R60_RS04230 - 848686..849717 (-) 1032 WP_316606706.1 ABC transporter permease -
  P3R60_RS04235 - 849728..850642 (-) 915 WP_104967234.1 ABC transporter permease -
  P3R60_RS04240 - 850758..852416 (-) 1659 WP_316606707.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38544.11 Da        Isoelectric Point: 4.9354

>NTDB_id=805846 P3R60_RS04225 WP_316606705.1 847625..848671(-) (oppD) [Streptococcus pluranimalium strain SP21-2]
MTQENILEVKNLHVDFQTYAGEVKAIREVNFELKKGETLAIVGESGSGKSVTTKTLMGLSAKNANISGEILFKNRNLNDL
KEEEWVKIRGNEIAMIFQDPMTSLDPTMKIGMQIAEPIILHEKISKKEALDRALELMKSVGIPNAEEHINDYPHQWSGGM
RQRAVIAVALAGNPEILIADEPTTALDVTIQAQILNLMKDIQQKTSSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTAAGALQSIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPMFKVSDSHYAATWLL
DKRAPEVTPPPQILKRWAKWQEKYGGIN

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=805846 P3R60_RS04225 WP_316606705.1 847625..848671(-) (oppD) [Streptococcus pluranimalium strain SP21-2]
ATGACACAAGAAAATATCTTAGAAGTTAAAAATCTTCATGTTGATTTCCAAACTTATGCTGGTGAAGTCAAAGCTATTCG
TGAAGTTAATTTTGAACTGAAAAAAGGTGAAACACTTGCAATAGTAGGTGAGTCAGGTTCAGGTAAATCAGTGACAACCA
AGACACTTATGGGCTTGTCTGCCAAGAATGCCAATATTTCAGGTGAGATTCTTTTTAAAAATCGTAATCTCAATGATTTA
AAAGAAGAAGAATGGGTTAAAATCCGTGGAAATGAAATTGCGATGATTTTCCAAGATCCGATGACTAGTCTTGATCCAAC
CATGAAGATTGGTATGCAAATCGCAGAACCGATTATACTACATGAAAAGATTTCGAAAAAAGAAGCTCTTGATCGTGCAC
TTGAGCTTATGAAGAGTGTCGGTATCCCGAATGCTGAGGAACATATCAACGATTACCCTCACCAGTGGTCAGGTGGAATG
CGCCAACGTGCCGTCATCGCTGTTGCGCTAGCTGGAAATCCTGAAATATTAATTGCTGATGAACCAACGACTGCTCTTGA
TGTAACGATTCAAGCTCAGATTTTAAATTTAATGAAAGATATTCAGCAGAAAACATCAAGTTCGATTATCTTTATCACTC
ACGACTTGGGTGTTGTTGCTGGTATGGCGGATCGTGTTGCTGTTATGTATGCTGGTAAAATCGTTGAATATGGGACTGTT
GATGAAGTTTTCTACAACCCACAACATCCTTACACTTGGGGACTTTTAAATTCAATGCCAACAACAGATACAGCAGCTGG
AGCCCTCCAGTCTATTCCTGGAACACCACCGGATTTGTTGAATCCTCCAAAAGGAGATGCCTTTGCAGCTCGTAATGAAT
TTGCATTGGACATTGATCATGAAGAAGAACCACCGATGTTTAAAGTATCAGATAGTCATTACGCCGCAACATGGCTCTTA
GATAAAAGAGCACCAGAGGTGACCCCTCCACCACAAATCCTAAAACGATGGGCCAAATGGCAAGAAAAATATGGAGGGAT
TAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

82.029

99.138

0.813
  amiE Streptococcus salivarius strain HSISS4

55.758

94.828

0.529
  amiE Streptococcus thermophilus LMG 18311

55.152

94.828

0.523
  amiE Streptococcus thermophilus LMD-9

55.152

94.828

0.523