Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   RKQ58_RS02530 Genome accession   NZ_CP134579
Coordinates   337012..338049 (+) Length   345 a.a.
NCBI ID   WP_216112386.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332012..343049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS02495 (RKQ58_02495) - 333672..333802 (-) 131 Protein_304 hypothetical protein -
  RKQ58_RS02500 (RKQ58_02500) rpoZ 333841..334119 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ58_RS02505 (RKQ58_02505) gmk 334192..334821 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ58_RS02510 (RKQ58_02510) ispH 334944..335894 (+) 951 WP_114159399.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ58_RS02515 (RKQ58_02515) - 335907..336158 (-) 252 Protein_308 hypothetical protein -
  RKQ58_RS02520 (RKQ58_02520) fimU 336064..336513 (+) 450 WP_114155191.1 GspH/FimT family pseudopilin Machinery gene
  RKQ58_RS02525 (RKQ58_02525) pilV 336510..337010 (+) 501 WP_004745401.1 type IV pilus modification protein PilV Machinery gene
  RKQ58_RS02530 (RKQ58_02530) pilW 337012..338049 (+) 1038 WP_216112386.1 PilW family protein Machinery gene
  RKQ58_RS02535 (RKQ58_02535) - 338046..338828 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -
  RKQ58_RS02540 (RKQ58_02540) - 338844..339239 (+) 396 WP_228750160.1 hypothetical protein -
  RKQ58_RS02545 (RKQ58_02545) - 339272..340480 (-) 1209 WP_000343018.1 IS256-like element ISAba26 family transposase -
  RKQ58_RS02550 (RKQ58_02550) pilY2 340584..341012 (+) 429 WP_391485003.1 type IV pilin protein Machinery gene
  RKQ58_RS02555 (RKQ58_02555) pilE 341006..341470 (+) 465 WP_004745412.1 type IV pilin protein Machinery gene
  RKQ58_RS02560 (RKQ58_02560) rpsP 341618..341869 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RKQ58_RS02565 (RKQ58_02565) rimM 341889..342437 (+) 549 WP_000189236.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37438.34 Da        Isoelectric Point: 7.8380

>NTDB_id=805846 RKQ58_RS02530 WP_216112386.1 337012..338049(+) (pilW) [Acinetobacter baumannii strain XH1034]
MKKHQGFTLIELILSLALGLIITAAAILLFLTSQKSLSMQVGVSDLQDNANFGLNYLSQDIRLANLNNPKAVINDQTAYG
GIVLTSAINSAKDAANEPLSNLYKTIIGVTADTNLLSRSQGHSVGSGNAWTGASNVQSNGSDIASDQLVIQYVPQYTIDT
KSTATQADDEYIGGTDCEGNNLNFPLASGRQVIIQRYFLRKDAKNNSDEPNQPLALACDAGYYPLTGNPTAVTRYGDAGE
IIMKRVDYFRVLLNVQGNSGRRYISIHDYLNLTAPRPRIVSVQIGLLTRSLQPVGAEIAIKDGQQFSVLDQTITVKKPEN
STKKYVRQVISQTIALRNVIGERGE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=805846 RKQ58_RS02530 WP_216112386.1 337012..338049(+) (pilW) [Acinetobacter baumannii strain XH1034]
ATGAAAAAGCATCAAGGTTTTACATTAATCGAGTTAATACTTTCGTTAGCCTTAGGTCTTATAATTACTGCAGCTGCAAT
ATTATTATTTTTGACTAGTCAAAAAAGTTTATCTATGCAGGTCGGAGTATCTGATTTACAAGATAATGCTAATTTTGGAC
TTAACTACTTATCTCAAGATATTCGTCTTGCAAATTTAAATAACCCCAAAGCAGTTATTAATGATCAAACTGCTTATGGC
GGTATTGTTCTAACCTCTGCGATTAATTCAGCTAAAGATGCTGCTAATGAACCTCTTAGTAATCTATATAAAACTATTAT
TGGGGTAACTGCTGACACTAATTTACTTTCACGTAGTCAAGGACATAGTGTCGGTAGTGGTAATGCTTGGACGGGAGCGT
CAAACGTCCAAAGTAATGGAAGTGATATCGCTAGTGACCAACTCGTTATTCAATATGTACCACAATATACAATTGATACA
AAAAGTACTGCAACTCAAGCTGATGATGAATATATAGGCGGTACAGATTGCGAAGGAAATAATCTGAATTTTCCTCTTGC
TAGTGGGCGTCAAGTCATAATACAACGTTATTTTTTACGTAAAGACGCTAAAAATAATAGTGATGAACCTAACCAACCTT
TAGCACTTGCTTGTGATGCCGGCTATTACCCATTAACTGGTAACCCAACTGCTGTAACTCGTTATGGGGATGCAGGTGAA
ATTATAATGAAACGTGTGGATTATTTTCGGGTTTTACTAAATGTTCAAGGGAATTCTGGACGACGTTATATTTCAATACA
TGATTATTTGAACTTGACAGCTCCTCGGCCACGTATTGTTTCAGTCCAAATTGGCTTATTAACACGTTCATTGCAACCTG
TAGGTGCAGAAATAGCAATTAAAGATGGTCAACAATTTTCTGTATTAGATCAAACTATCACAGTAAAAAAACCTGAAAAT
TCGACAAAAAAATATGTGCGTCAAGTGATATCACAAACCATTGCCTTGCGTAATGTGATCGGGGAGCGTGGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Type IV Pilus-assembly protein W (PilW)

(197-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

39.496

100

0.409