Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RKQ58_RS02525 Genome accession   NZ_CP134579
Coordinates   336510..337010 (+) Length   166 a.a.
NCBI ID   WP_004745401.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331510..342010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS02490 (RKQ58_02490) - 331528..333633 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RKQ58_RS02495 (RKQ58_02495) - 333672..333802 (-) 131 Protein_304 hypothetical protein -
  RKQ58_RS02500 (RKQ58_02500) rpoZ 333841..334119 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ58_RS02505 (RKQ58_02505) gmk 334192..334821 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ58_RS02510 (RKQ58_02510) ispH 334944..335894 (+) 951 WP_114159399.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ58_RS02515 (RKQ58_02515) - 335907..336158 (-) 252 Protein_308 hypothetical protein -
  RKQ58_RS02520 (RKQ58_02520) fimU 336064..336513 (+) 450 WP_114155191.1 GspH/FimT family pseudopilin Machinery gene
  RKQ58_RS02525 (RKQ58_02525) pilV 336510..337010 (+) 501 WP_004745401.1 type IV pilus modification protein PilV Machinery gene
  RKQ58_RS02530 (RKQ58_02530) pilW 337012..338049 (+) 1038 WP_216112386.1 PilW family protein Machinery gene
  RKQ58_RS02535 (RKQ58_02535) - 338046..338828 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -
  RKQ58_RS02540 (RKQ58_02540) - 338844..339239 (+) 396 WP_228750160.1 hypothetical protein -
  RKQ58_RS02545 (RKQ58_02545) - 339272..340480 (-) 1209 WP_000343018.1 IS256-like element ISAba26 family transposase -
  RKQ58_RS02550 (RKQ58_02550) pilY2 340584..341012 (+) 429 WP_391485003.1 type IV pilin protein Machinery gene
  RKQ58_RS02555 (RKQ58_02555) pilE 341006..341470 (+) 465 WP_004745412.1 type IV pilin protein Machinery gene
  RKQ58_RS02560 (RKQ58_02560) rpsP 341618..341869 (+) 252 WP_000260334.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18254.82 Da        Isoelectric Point: 4.8719

>NTDB_id=805845 RKQ58_RS02525 WP_004745401.1 336510..337010(+) (pilV) [Acinetobacter baumannii strain XH1034]
MKKIAHQRGMGMIEILVALLILAIGVLGFIALQYRALEASAESTSRVQAITIARDIAERIRVNRNSLAVYNQQLQDPIKQ
KDFVKDCFQDNCSDTDLADFDVAQVVKNASSLGMTMNMIACPQTKNRQCVYIAWGDTSATNGTSAGDCTQDTAYNDNSTC
VIMETY

Nucleotide


Download         Length: 501 bp        

>NTDB_id=805845 RKQ58_RS02525 WP_004745401.1 336510..337010(+) (pilV) [Acinetobacter baumannii strain XH1034]
ATGAAGAAGATTGCACACCAACGTGGTATGGGAATGATTGAAATTTTAGTTGCTTTGCTGATTTTAGCAATTGGAGTTTT
AGGATTTATTGCTTTGCAATATAGAGCTTTAGAGGCAAGTGCAGAAAGCACTTCACGCGTACAAGCAATTACGATAGCAC
GTGATATAGCTGAGCGGATTAGAGTTAACCGTAATTCATTAGCTGTGTATAACCAACAACTTCAAGATCCTATTAAACAG
AAAGACTTTGTCAAAGATTGCTTCCAAGACAATTGTAGTGACACAGATTTAGCAGATTTCGATGTTGCACAAGTTGTGAA
AAATGCGTCTTCCTTAGGCATGACTATGAATATGATTGCTTGCCCACAAACTAAAAATCGACAATGTGTTTATATTGCAT
GGGGTGATACTAGTGCAACGAATGGCACCAGTGCAGGGGATTGCACTCAAGATACTGCATATAACGATAATTCAACGTGT
GTGATTATGGAGACCTATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

40.11

100

0.44
  pilV Acinetobacter baumannii D1279779

39.665

100

0.428