Detailed information NTG0805845

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: P3R60_RS04220
• Genome accession: NZ_CP120510
• Coordinates: 846690..847625 (-)
• Length: 311 a.a.
• NCBI ID: WP_316606704.1
• Uniprot ID: -
• Organism: Streptococcus pluranimalium strain SP21-2
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	845478..845963	846690..847625	flank	727

Gene organization within MGE regions

Location: 845478..847625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3R60_RS04215	-	845478..846398 (+)	921	Protein_821	IS30 family transposase	-
P3R60_RS04220	amiF	846690..847625 (-)	936	WP_316606704.1	ATP-binding cassette domain-containing protein	Regulator

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35224.12 Da
• Isoelectric Point: 6.3745

>NTDB_id=805845 P3R60_RS04220 WP_316606704.1 846690..847625(-) (amiF) [Streptococcus pluranimalium strain SP21-2]
MENNKKKLVELKNVSLTFNEGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINDGEIIFNGEKVSHL
KGKAQHNFRKQAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVSSKEERDEKVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTKSLLSAIPEPDPEKERARIHQVYDPTAELDGQERTMHEITPGHFVLATEEEAQLYKEQLQK

Nucleotide

• Length: 936 bp

>NTDB_id=805845 P3R60_RS04220 WP_316606704.1 846690..847625(-) (amiF) [Streptococcus pluranimalium strain SP21-2]
ATGGAAAATAACAAAAAAAAATTAGTTGAACTAAAAAATGTTTCTCTTACGTTTAACGAAGGGAAATCAAACGAAGTTAA
AGCCATTAATAATGTTAGCTTTGACATCTATGAAGGTGAAGTTTTTGGTTTAGTTGGTGAGTCTGGTTCAGGTAAAACAA
CCGTTGGTCGTGCTATTTTGAAACTGTATGATATTAACGACGGAGAAATTATCTTTAATGGTGAAAAAGTCTCACATTTA
AAAGGTAAAGCACAACATAATTTCCGTAAACAAGCTCAAATGATTTTTCAAGATCCACAAGCAAGTCTTAACGGGCGAAT
GAAAATCCGTGATATTGTTGCTGAAGGATTGGACATCCATAAGTTGGTTTCATCCAAGGAAGAACGTGATGAAAAAGTTC
AACACCTTCTTGATTTAGTTGGTTTAAATAAAGATCACTTAACACGTTATCCTCATGAGTTTTCTGGTGGACAACGTCAG
CGTATCGGTATTGCCCGTGCTCTTGCTGTTGAACCGAAATTTATCATTGCCGATGAACCAATTTCAGCGTTGGATGTTTC
TATTCAAGCTCAAGTTGTTAATTTGATGCAAAAATTACAACGTGAGCAAGGCTTGACATATCTCTTTATTGCCCACGATT
TATCAATGGTTAAATATATTTCAGATCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGAACATCTGAAGAT
GTTTATAATAATCCGATTCATCCTTATACAAAGAGTTTATTGTCAGCTATTCCAGAACCGGATCCTGAAAAAGAACGTGC
ACGTATCCACCAAGTCTATGATCCAACAGCAGAATTGGATGGACAAGAACGCACTATGCATGAAATCACACCAGGTCATT
TTGTTCTTGCTACAGAAGAAGAAGCACAGCTCTATAAAGAACAATTGCAAAAGTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.035	0.537
amiF	Streptococcus thermophilus LMG 18311	53.896	99.035	0.534
amiF	Streptococcus salivarius strain HSISS4	53.896	99.035	0.534