Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLUC147_RS11300 Genome accession   NZ_CP120473
Coordinates   2218665..2219156 (-) Length   163 a.a.
NCBI ID   WP_396425237.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC147     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2213665..2224156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC147_RS11300 (LLUC147_11330) comX 2218665..2219156 (-) 492 WP_396425237.1 sigma-70 family RNA polymerase sigma factor Regulator
  LLUC147_RS11305 (LLUC147_11335) ezrA 2219420..2221150 (-) 1731 WP_081196899.1 septation ring formation regulator EzrA -
  LLUC147_RS11310 (LLUC147_11340) tsf 2221355..2222383 (-) 1029 WP_011677206.1 translation elongation factor Ts -
  LLUC147_RS11315 (LLUC147_11345) rpsB 2222505..2223272 (-) 768 WP_396425348.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19730.55 Da        Isoelectric Point: 6.2263

>NTDB_id=805809 LLUC147_RS11300 WP_396425237.1 2218665..2219156(-) (comX) [Lactococcus cremoris strain UC147]
MTYYLEENEFEGLFSGMKPIIRKLMKQIRIKAWDIEDYYQEGMIILHHLLEENHPSTNIYTKFKVKYHQRLIDELRHRYA
KKRLHDHFVGLDIYECSDWIDAGGSTPESELVFNHLLAEVYEGLSAHYQELLVRQMRGEELTRMECYRLREKIKNILFSR
DDD

Nucleotide


Download         Length: 492 bp        

>NTDB_id=805809 LLUC147_RS11300 WP_396425237.1 2218665..2219156(-) (comX) [Lactococcus cremoris strain UC147]
ATGACATATTACTTGGAAGAAAATGAATTCGAAGGTTTATTTTCTGGAATGAAACCAATCATCAGAAAATTGATGAAACA
AATTCGAATCAAAGCATGGGACATAGAGGATTATTATCAAGAAGGAATGATTATTTTGCATCACCTTTTAGAAGAAAATC
ACCCATCCACTAATATTTATACAAAGTTCAAAGTAAAATATCATCAACGTTTGATTGATGAACTACGCCATAGATACGCC
AAAAAACGGCTTCATGACCATTTTGTAGGTCTAGACATTTATGAATGTTCGGACTGGATAGATGCAGGAGGAAGTACCCC
TGAAAGCGAGCTTGTGTTCAACCATCTTTTAGCAGAAGTTTATGAAGGATTGAGCGCCCACTATCAGGAATTACTCGTGC
GTCAAATGAGAGGAGAAGAACTCACGCGAATGGAATGCTATCGGCTACGAGAAAAAATCAAAAATATACTATTTTCTCGA
GATGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

98.16

100

0.982
  comX Lactococcus lactis subsp. lactis strain DGCC12653

74.847

100

0.748