Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P5W76_RS10425 Genome accession   NZ_CP120425
Coordinates   2184136..2184531 (+) Length   131 a.a.
NCBI ID   WP_001829977.1    Uniprot ID   A0A4Q9W3V8
Organism   Staphylococcus epidermidis strain 25DSE01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2179136..2189531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5W76_RS10400 - 2180555..2180959 (+) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -
  P5W76_RS10405 - 2181108..2181341 (+) 234 WP_002456242.1 DUF1146 family protein -
  P5W76_RS10410 murA 2181451..2182716 (+) 1266 WP_277369480.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P5W76_RS10415 fabZ 2182750..2183187 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P5W76_RS10420 - 2183505..2183945 (-) 441 WP_001829935.1 YwpF-like family protein -
  P5W76_RS10425 ssb 2184136..2184531 (+) 396 WP_001829977.1 single-stranded DNA-binding protein Machinery gene
  P5W76_RS10430 - 2184919..2185578 (+) 660 WP_001829904.1 transglycosylase family protein -
  P5W76_RS10435 tenA 2185863..2186552 (+) 690 WP_001829894.1 thiaminase II -
  P5W76_RS10440 thiD 2186545..2187366 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P5W76_RS10445 thiM 2187359..2188147 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  P5W76_RS10450 thiE 2188153..2188791 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15158.08 Da        Isoelectric Point: 5.2661

>NTDB_id=805682 P5W76_RS10425 WP_001829977.1 2184136..2184531(+) (ssb) [Staphylococcus epidermidis strain 25DSE01]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=805682 P5W76_RS10425 WP_001829977.1 2184136..2184531(+) (ssb) [Staphylococcus epidermidis strain 25DSE01]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9W3V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

73.282

100

0.733
  ssb Staphylococcus aureus MW2

72.519

100

0.725