Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P5W77_RS04355 Genome accession   NZ_CP120424
Coordinates   945904..946299 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain 32FSE06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 940904..951299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5W77_RS04330 - 942323..942727 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  P5W77_RS04335 - 942876..943109 (+) 234 WP_002456242.1 DUF1146 family protein -
  P5W77_RS04340 murA 943219..944484 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P5W77_RS04345 fabZ 944518..944955 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P5W77_RS04350 - 945273..945713 (-) 441 WP_001829935.1 YwpF-like family protein -
  P5W77_RS04355 ssb 945904..946299 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  P5W77_RS04360 - 946687..947346 (+) 660 WP_001829904.1 transglycosylase family protein -
  P5W77_RS04365 tenA 947630..948319 (+) 690 WP_001829894.1 thiaminase II -
  P5W77_RS04370 thiD 948312..949133 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P5W77_RS04375 thiM 949126..949914 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  P5W77_RS04380 thiE 949920..950558 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=805630 P5W77_RS04355 WP_002457121.1 945904..946299(+) (ssb) [Staphylococcus epidermidis strain 32FSE06]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=805630 P5W77_RS04355 WP_002457121.1 945904..946299(+) (ssb) [Staphylococcus epidermidis strain 32FSE06]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733