Detailed information NTG0805280

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: P3T65_RS24160
• Genome accession: NZ_CP120376
• Coordinates: 5313124..5315334 (-)
• Length: 736 a.a.
• NCBI ID: WP_277368658.1
• Uniprot ID: -
• Organism: Pseudomonas nitroreducens strain L4
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5308124..5320334

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3T65_RS24125 (P3T65_24125)	murB	5308480..5309499 (-)	1020	WP_196912095.1	UDP-N-acetylmuramate dehydrogenase	-
P3T65_RS24130 (P3T65_24130)	-	5309496..5309960 (-)	465	WP_024766673.1	low molecular weight protein-tyrosine-phosphatase	-
P3T65_RS24135 (P3T65_24135)	kdsB	5309960..5310724 (-)	765	WP_065084902.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
P3T65_RS24140 (P3T65_24140)	-	5310729..5310914 (-)	186	WP_009621404.1	Trm112 family protein	-
P3T65_RS24145 (P3T65_24145)	lpxK	5310973..5311971 (-)	999	WP_277368657.1	tetraacyldisaccharide 4'-kinase	-
P3T65_RS24150 (P3T65_24150)	-	5311971..5312420 (-)	450	WP_024766674.1	ExbD/TolR family protein	-
P3T65_RS24155 (P3T65_24155)	exbB	5312417..5313052 (-)	636	WP_024766675.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
P3T65_RS24160 (P3T65_24160)	comA	5313124..5315334 (-)	2211	WP_277368658.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
P3T65_RS24165 (P3T65_24165)	-	5315497..5316027 (+)	531	WP_024766677.1	DUF2062 domain-containing protein	-
P3T65_RS24170 (P3T65_24170)	-	5316176..5317423 (-)	1248	WP_084357382.1	lipoprotein-releasing ABC transporter permease subunit	-
P3T65_RS24175 (P3T65_24175)	lolD	5317435..5318124 (-)	690	WP_024766679.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
P3T65_RS24180 (P3T65_24180)	-	5318117..5319370 (-)	1254	WP_045211653.1	lipoprotein-releasing ABC transporter permease subunit	-
P3T65_RS24185 (P3T65_24185)	-	5319495..5320070 (+)	576	WP_024766681.1	PilZ domain-containing protein	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79346.80 Da
• Isoelectric Point: 8.3217

>NTDB_id=805280 P3T65_RS24160 WP_277368658.1 5313124..5315334(-) (comA) [Pseudomonas nitroreducens strain L4]
MFALALGLLALRWLPALPSGWVLLLLALCALPLLFTRGYFVGLFLLGFAWACQSAQWALDDRLAPELDGRTLWLEGRVEG
LPDRSGPSVRFVLSEVSSPRAQVPATLRLSWFGGPPVEGGERWRLAVKLKRPHGMVNGVGFDYEAWLTAQRIGATGSVKD
GQRLEASSGPRAWREAWRQRLLAVDAQGRSGALAALVLGDASGLTTADWQVLQDTGTLHLMVISGSHISLLAGLLYAVVA
GLARLGCWPSRLPWLPCACLLAASGAWAYSLMAGFEVPLQRACVMVSIVLLWRLRYRHRGLWTPLLGALLAVLVAEPLVV
LLPGFWLSYAAVALLIFGFSGRLGRWTAWRTWLRAQWLMAIGLLPASIALGLPLSISGVAANLIAVPWVELVVVPLALLG
SLALGVPGVGELLLWVSGGLLEILFRLLGWMAELAPAWQPVAAPTWTLILAMLGALLLLAPAGVPLRSLGLAMLLPVFWP
SIPLPAPGMAEIRVLDVGQGLSVLIRTRSQSWLYDTGARNGDFDIGERVVVPTLRSLGVGKLDLLMLSHADNDHAGGALA
VKHSLRPAQVISGEPERLAPELQASPCRIEEWRVDGVRLSSWMWAGARESNDRSCALEVEANGERILLTGDLPQSAELAW
LAAHPAERIDWLLAGHHGSRSSSGPAFLRAIRPSTAIISRGANNPYGHPHPSVVERFRTLGIRIQDTAEEGALVLTLGAH
GELGGVREGAHFWQEN

Nucleotide

• Length: 2211 bp

>NTDB_id=805280 P3T65_RS24160 WP_277368658.1 5313124..5315334(-) (comA) [Pseudomonas nitroreducens strain L4]
ATGTTCGCTCTGGCCCTGGGACTGCTGGCGCTGCGCTGGCTGCCGGCGCTGCCATCTGGTTGGGTGCTGCTGCTTCTCGC
ACTGTGCGCTTTGCCTCTGTTGTTCACTCGCGGCTACTTCGTCGGGCTGTTCCTGCTCGGCTTCGCCTGGGCCTGCCAAT
CGGCCCAGTGGGCGCTGGATGACCGGCTGGCGCCGGAGCTGGACGGCCGCACGCTGTGGCTGGAGGGCAGGGTAGAGGGC
TTGCCGGATCGTTCGGGGCCTTCAGTGCGCTTCGTGCTCTCCGAGGTTTCCAGCCCGCGCGCGCAGGTTCCGGCAACACT
GCGCCTGTCCTGGTTCGGCGGGCCGCCGGTAGAAGGTGGCGAGCGCTGGCGGTTGGCAGTGAAGCTCAAGCGTCCCCACG
GCATGGTCAACGGCGTGGGCTTCGATTACGAGGCCTGGCTCACTGCCCAGCGCATCGGCGCCACCGGCAGCGTGAAGGAC
GGGCAGCGCCTGGAGGCTTCCAGCGGCCCGCGCGCCTGGCGCGAAGCCTGGAGGCAACGCCTGCTGGCAGTGGACGCCCA
GGGGCGCTCTGGTGCGCTTGCCGCGCTGGTACTGGGCGACGCTTCCGGGTTGACCACGGCGGACTGGCAGGTCCTGCAGG
ACACCGGAACCCTGCACCTGATGGTGATTTCCGGCTCACACATATCCCTGCTGGCGGGCCTGCTATACGCCGTCGTGGCG
GGACTGGCGCGCCTGGGCTGCTGGCCATCCCGTCTGCCCTGGTTGCCCTGCGCCTGCCTGCTGGCTGCCAGCGGCGCCTG
GGCCTACAGCCTGATGGCGGGCTTCGAGGTGCCGTTGCAGCGCGCGTGCGTGATGGTCTCCATCGTCCTGCTGTGGCGTT
TGCGCTATCGCCATCGGGGATTGTGGACGCCGCTGCTGGGCGCTTTGCTAGCCGTGCTGGTGGCTGAGCCCTTGGTGGTG
TTGCTGCCGGGGTTCTGGTTGTCCTACGCGGCGGTGGCTTTGCTGATCTTCGGCTTCTCCGGCCGCCTGGGACGCTGGAC
GGCCTGGCGCACCTGGCTGCGTGCGCAGTGGCTGATGGCGATCGGGTTGTTGCCGGCGTCCATCGCGCTGGGCCTGCCGC
TGAGCATTTCCGGTGTCGCCGCCAACCTGATTGCGGTGCCCTGGGTGGAGCTGGTCGTGGTTCCGCTCGCTCTGTTGGGC
AGTCTGGCGCTGGGGGTTCCCGGCGTGGGGGAGTTGCTGCTCTGGGTGTCCGGCGGCCTGCTGGAAATACTGTTTCGTCT
GCTCGGATGGATGGCCGAGCTGGCGCCCGCCTGGCAGCCGGTGGCGGCGCCAACCTGGACGCTGATACTGGCGATGCTCG
GTGCGCTCCTGCTGCTGGCGCCGGCGGGAGTACCGCTGCGCTCGCTCGGGCTGGCGATGCTCCTGCCGGTGTTCTGGCCG
AGCATTCCGCTGCCCGCGCCGGGCATGGCCGAGATCCGCGTACTGGACGTGGGGCAGGGGCTTTCGGTGCTGATCCGTAC
CCGCAGTCAGAGCTGGCTCTACGACACTGGTGCGCGCAACGGAGATTTCGATATCGGCGAGCGGGTGGTGGTGCCGACCT
TGCGGAGTCTTGGCGTCGGCAAGCTCGATCTGCTGATGCTCAGCCATGCGGACAATGACCATGCCGGCGGTGCGTTGGCG
GTGAAGCATTCACTCCGGCCTGCGCAGGTTATCAGTGGCGAGCCGGAAAGACTGGCGCCAGAGTTGCAGGCAAGCCCCTG
TCGAATCGAGGAATGGAGGGTTGATGGCGTACGCCTGTCCAGCTGGATGTGGGCAGGCGCCAGGGAAAGCAACGACCGCT
CGTGCGCGCTGGAAGTCGAGGCCAATGGCGAGCGCATCCTGCTCACTGGCGACCTGCCACAATCTGCCGAACTGGCCTGG
CTGGCGGCGCATCCGGCCGAGCGCATCGATTGGTTGCTGGCCGGGCACCACGGCAGCCGTAGTTCCTCCGGGCCGGCCTT
CCTGCGGGCGATCCGTCCATCCACCGCGATCATCTCGCGCGGTGCCAATAACCCCTACGGCCATCCGCACCCGTCGGTCG
TCGAGCGCTTCCGTACGCTGGGCATACGGATTCAGGATACGGCGGAGGAGGGCGCGCTAGTCCTGACCCTAGGTGCCCAT
GGCGAGCTTGGGGGAGTGCGGGAAGGCGCACATTTCTGGCAGGAAAATTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-679)

• Competence protein (Competence) (196-459)

• Domain of unknown function (DUF4131) (DUF4131) (16-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	57.799	97.554	0.564