Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   P3T65_RS24155 Genome accession   NZ_CP120376
Coordinates   5312417..5313052 (-) Length   211 a.a.
NCBI ID   WP_024766675.1    Uniprot ID   A0A1B8T0F4
Organism   Pseudomonas nitroreducens strain L4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5307417..5318052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T65_RS24125 (P3T65_24125) murB 5308480..5309499 (-) 1020 WP_196912095.1 UDP-N-acetylmuramate dehydrogenase -
  P3T65_RS24130 (P3T65_24130) - 5309496..5309960 (-) 465 WP_024766673.1 low molecular weight protein-tyrosine-phosphatase -
  P3T65_RS24135 (P3T65_24135) kdsB 5309960..5310724 (-) 765 WP_065084902.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P3T65_RS24140 (P3T65_24140) - 5310729..5310914 (-) 186 WP_009621404.1 Trm112 family protein -
  P3T65_RS24145 (P3T65_24145) lpxK 5310973..5311971 (-) 999 WP_277368657.1 tetraacyldisaccharide 4'-kinase -
  P3T65_RS24150 (P3T65_24150) - 5311971..5312420 (-) 450 WP_024766674.1 ExbD/TolR family protein -
  P3T65_RS24155 (P3T65_24155) exbB 5312417..5313052 (-) 636 WP_024766675.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P3T65_RS24160 (P3T65_24160) comA 5313124..5315334 (-) 2211 WP_277368658.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P3T65_RS24165 (P3T65_24165) - 5315497..5316027 (+) 531 WP_024766677.1 DUF2062 domain-containing protein -
  P3T65_RS24170 (P3T65_24170) - 5316176..5317423 (-) 1248 WP_084357382.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22981.25 Da        Isoelectric Point: 7.2808

>NTDB_id=805279 P3T65_RS24155 WP_024766675.1 5312417..5313052(-) (exbB) [Pseudomonas nitroreducens strain L4]
MWELVKAGGWMMLPILLSSVAAMAIVAERLWTLRLSRVAPPQLLGQVWKQIKDRKMNSQALKDLRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAA
GLIVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVTQGDREVDFVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=805279 P3T65_RS24155 WP_024766675.1 5312417..5313052(-) (exbB) [Pseudomonas nitroreducens strain L4]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCTTGCTGAGCTCCGTCGCTGCCATGGCGATCGTCGC
CGAACGTCTCTGGACCTTGCGCTTGAGTCGCGTGGCCCCGCCGCAGTTGCTCGGCCAGGTATGGAAGCAGATCAAGGACA
GGAAGATGAACAGCCAGGCCCTCAAGGACCTGCGCGCATCCTCCCCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAAATCATGAAGGAGTGCATCGAGGAAGCCGCTTCCCGCGTGATCCACGAGCTGGAGCGCTACCT
CAACGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGATGGCATGGCCAACGCGCCGATGCTCGCCGGCGGCATCTCCAAGGCCCTGATCACCACCGCGGCC
GGCCTGATCGTGGCGATCCCCGCAGTATTCTTCCATCGTTACCTGCTGCGCCGCGTCGATGAGCTGGTCATCGCCATGGA
GCAGGAAGCCATCAAGCTGGTGGAAGTGACCCAGGGCGACCGCGAAGTCGACTTCGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8T0F4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806