Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   P3T65_RS08020 Genome accession   NZ_CP120376
Coordinates   1724180..1724587 (+) Length   135 a.a.
NCBI ID   WP_015475142.1    Uniprot ID   A0AA42HJ21
Organism   Pseudomonas nitroreducens strain L4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1719180..1729587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T65_RS07990 (P3T65_07990) - 1719226..1720230 (-) 1005 WP_037013504.1 aspartate carbamoyltransferase catalytic subunit -
  P3T65_RS07995 (P3T65_07995) pyrR 1720276..1720788 (-) 513 WP_024766241.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  P3T65_RS08000 (P3T65_08000) ruvX 1720907..1721344 (-) 438 WP_089285805.1 Holliday junction resolvase RuvX -
  P3T65_RS08005 (P3T65_08005) - 1721341..1721910 (-) 570 WP_024766240.1 YqgE/AlgH family protein -
  P3T65_RS08010 (P3T65_08010) - 1721986..1722879 (-) 894 WP_024766239.1 energy transducer TonB -
  P3T65_RS08015 (P3T65_08015) gshB 1722936..1723898 (-) 963 WP_024766238.1 glutathione synthase -
  P3T65_RS08020 (P3T65_08020) pilG 1724180..1724587 (+) 408 WP_015475142.1 twitching motility response regulator PilG Regulator
  P3T65_RS08025 (P3T65_08025) pilH 1724634..1724999 (+) 366 WP_024766237.1 twitching motility response regulator PilH -
  P3T65_RS08030 (P3T65_08030) - 1725054..1725590 (+) 537 WP_017520132.1 chemotaxis protein CheW -
  P3T65_RS08035 (P3T65_08035) - 1725674..1727722 (+) 2049 WP_024766236.1 methyl-accepting chemotaxis protein -
  P3T65_RS08040 (P3T65_08040) - 1727785..1728648 (+) 864 WP_196912212.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14810.17 Da        Isoelectric Point: 6.8621

>NTDB_id=805262 P3T65_RS08020 WP_015475142.1 1724180..1724587(+) (pilG) [Pseudomonas nitroreducens strain L4]
MEQHSDGLKVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPSIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKTHVPDFTPVEHAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=805262 P3T65_RS08020 WP_015475142.1 1724180..1724587(+) (pilG) [Pseudomonas nitroreducens strain L4]
ATGGAACAGCATTCCGACGGTTTGAAAGTAATGGTGATCGACGATTCCAAGACGATTCGTCGCACGGCTGAAACCCTGCT
GAAGAAGGTTGGCTGCGATGTCATTACAGCCATCGACGGCTTCGACGCGCTGGCCAAGATCGCCGATACCCATCCCAGCA
TCATCTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGATCAAGAACAATAGTGCCTTCAAA
TCCACGCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGTTCCGATCAGTA
CCTCACCAAGCCCTTCAGCAAGGAAGAACTGCTCGGCGCGATCAAGACCCATGTGCCCGACTTCACCCCGGTGGAGCACG
CTTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

92.593

0.696
  vicR Streptococcus mutans UA159

42.063

93.333

0.393