Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PVE35_RS20190 Genome accession   NZ_CP120359
Coordinates   4387591..4389192 (-) Length   533 a.a.
NCBI ID   WP_268178862.1    Uniprot ID   -
Organism   Pseudomonas sp. AA-38     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4382591..4394192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE35_RS20170 trxB 4383037..4383984 (-) 948 WP_277372788.1 thioredoxin-disulfide reductase -
  PVE35_RS20175 cysZ 4384243..4384974 (+) 732 WP_268178858.1 sulfate transporter CysZ -
  PVE35_RS20180 - 4385043..4386239 (+) 1197 WP_268178859.1 glycosyltransferase family 1 protein -
  PVE35_RS20185 pilR 4386248..4387588 (-) 1341 WP_268178860.1 sigma-54 dependent transcriptional regulator Regulator
  PVE35_RS20190 pilS 4387591..4389192 (-) 1602 WP_268178862.1 ATP-binding protein Regulator
  PVE35_RS20195 - 4389176..4389418 (-) 243 WP_268178864.1 PP0621 family protein -
  PVE35_RS20200 - 4389590..4390582 (-) 993 WP_268178866.1 outer membrane protein assembly factor BamD -
  PVE35_RS20205 rluD 4390722..4391696 (+) 975 WP_268178868.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PVE35_RS20210 pgeF 4391693..4392424 (+) 732 WP_277372789.1 peptidoglycan editing factor PgeF -
  PVE35_RS20215 - 4392596..4393705 (+) 1110 WP_277372790.1 NADH:flavin oxidoreductase -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 59541.92 Da        Isoelectric Point: 9.2126

>NTDB_id=805202 PVE35_RS20190 WP_268178862.1 4387591..4389192(-) (pilS) [Pseudomonas sp. AA-38]
MPVIAESFAGLDSVPARRILRLYHFYRLSIGLALVLLISSKLDEQLLDLVHIELFRTGSWIYLITNIFIAVLVHKPRHML
QLFSLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRIGLLIAAIAALALIFTTFYLSLRYPAASSQYVQAG
ALGSLCFAGALFIQGITRRLRLSETLAEQRAADVANLEELNTQIIQRMRTGILVLDTQHRVLLANQGATQLLGQGELAGK
ILDPHCPELVKRLQQWQHNPTLRPASLQAQIDGPVLQPSFISLQRGMQQHTLVFLDDISQIAQQAQQLKLASLGRLTAGI
AHEIRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSA
PADRQLHLQTQSGSLQTRMDPQQLNQVLTNLVQNGLRYSAQKHRLGQVWLRLFRDEASDLPVLEILDDGPGVPPEQKQHI
FEPFYTTENKGTGLGLYISRELCESNQARLDYKPREEGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=805202 PVE35_RS20190 WP_268178862.1 4387591..4389192(-) (pilS) [Pseudomonas sp. AA-38]
ATGCCGGTGATCGCTGAGAGCTTCGCAGGCCTGGACAGCGTACCGGCCCGGCGGATTCTCAGGCTTTACCATTTCTATCG
GCTGAGCATCGGCCTGGCGCTGGTGCTGCTGATTTCCAGTAAGCTCGACGAGCAGTTGCTCGATCTGGTGCATATCGAGC
TGTTTCGCACCGGTAGCTGGATCTACCTGATCACCAATATCTTCATCGCCGTGCTGGTGCACAAACCCCGGCACATGCTG
CAACTGTTCAGCCTGGCGCTGGTGGATGTGATCTTCCTCTCGGCCCTGTTCTACGCCGCCGGTGGCACGCCCAGCGGTAT
CGGCAACTTGCTGGTGGTGGCGGTGGCCATTGCCAATATCCTTCTGCGCGGCCGTATCGGTCTGCTGATCGCCGCCATCG
CCGCGCTGGCGCTGATCTTCACCACCTTCTACCTGAGTCTGCGCTACCCCGCCGCTTCGTCCCAGTACGTGCAGGCGGGG
GCCCTGGGCTCGCTGTGTTTCGCCGGCGCCCTGTTCATTCAGGGCATCACCCGGCGCCTGCGCCTGAGCGAGACCCTGGC
CGAACAGCGCGCAGCGGATGTGGCCAACCTCGAAGAGCTCAACACCCAGATCATCCAGCGCATGCGCACCGGCATCCTGG
TGCTCGATACCCAGCATCGTGTGCTGCTGGCCAATCAGGGCGCCACACAGTTGCTGGGGCAGGGCGAACTGGCCGGCAAG
ATCCTCGACCCGCATTGCCCGGAGCTGGTCAAACGCCTGCAGCAATGGCAGCACAACCCCACCCTGCGCCCGGCAAGCCT
GCAGGCCCAGATCGACGGCCCGGTGCTGCAACCCAGCTTCATCTCCTTGCAGCGCGGCATGCAGCAGCACACCCTGGTGT
TTCTCGACGATATCTCGCAGATCGCCCAGCAGGCGCAGCAACTCAAGCTGGCCTCGCTCGGGCGCCTGACCGCCGGTATT
GCCCATGAGATCCGCAACCCGCTCGGCGCCATCAGCCATGCCGCGCAATTGCTGCAGGAGTCCGAGGATCTGCAGGGGCC
GGATCAGCGTCTGGCGCAGATCATTCAGGATCATTCCAAGCGCATGAACCTGGTGATCGAGAACGTGCTGCAGCTTTCCC
GGCGGCGCCAGGCCGAGCCGCAACTGCTCGACCTCAAGTACTGGCTGCATCGCTTCGCCAGCGAGTTCCGCAGCTCGGCG
CCGGCCGACCGGCAGCTTCACCTGCAGACCCAGAGCGGCAGCCTGCAGACGCGCATGGATCCCCAACAACTGAACCAGGT
GCTGACCAACTTGGTGCAGAACGGCCTGCGCTACAGCGCGCAGAAGCACCGGCTCGGCCAGGTCTGGCTGCGCCTGTTCC
GCGACGAGGCCAGCGACCTGCCGGTGCTGGAGATACTCGATGACGGCCCAGGCGTGCCGCCCGAGCAGAAGCAACATATC
TTCGAGCCGTTCTACACCACGGAGAACAAGGGCACCGGCCTGGGCCTGTACATCTCCCGCGAGCTGTGCGAAAGCAACCA
GGCCCGCCTCGATTACAAACCCCGCGAAGAGGGCGGTAGCTGTTTCCGCATCACCTTCGCCCATCCGCGCAAACTGAGCT
GA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(420-526)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

68.726

97.186

0.668