Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PVE35_RS14200 Genome accession   NZ_CP120359
Coordinates   3098988..3101213 (-) Length   741 a.a.
NCBI ID   WP_277372171.1    Uniprot ID   -
Organism   Pseudomonas sp. AA-38     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3093988..3106213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE35_RS14165 murB 3094404..3095423 (-) 1020 WP_268183167.1 UDP-N-acetylmuramate dehydrogenase -
  PVE35_RS14170 - 3095420..3095884 (-) 465 WP_268183165.1 low molecular weight protein-tyrosine-phosphatase -
  PVE35_RS14175 kdsB 3095884..3096648 (-) 765 WP_277372169.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PVE35_RS14180 - 3096649..3096834 (-) 186 WP_268183161.1 Trm112 family protein -
  PVE35_RS14185 lpxK 3096854..3097858 (-) 1005 WP_277372170.1 tetraacyldisaccharide 4'-kinase -
  PVE35_RS14190 - 3097859..3098287 (-) 429 WP_268183157.1 biopolymer transporter ExbD -
  PVE35_RS14195 exbB 3098284..3098916 (-) 633 WP_268183155.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PVE35_RS14200 comA 3098988..3101213 (-) 2226 WP_277372171.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PVE35_RS14205 - 3101309..3101833 (+) 525 WP_268183152.1 DUF2062 domain-containing protein -
  PVE35_RS14210 - 3101900..3103144 (-) 1245 WP_268183150.1 lipoprotein-releasing ABC transporter permease subunit -
  PVE35_RS14215 lolD 3103144..3103830 (-) 687 WP_268184257.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PVE35_RS14220 - 3103850..3105097 (-) 1248 WP_268183148.1 lipoprotein-releasing ABC transporter permease subunit -
  PVE35_RS14225 - 3105238..3105804 (+) 567 WP_268183146.1 PilZ domain-containing protein -
  PVE35_RS14230 - 3105827..3106129 (+) 303 WP_277372172.1 phosphodiesterase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80445.88 Da        Isoelectric Point: 11.1027

>NTDB_id=805198 PVE35_RS14200 WP_277372171.1 3098988..3101213(-) (comA) [Pseudomonas sp. AA-38]
MRAGMLALAAGLLALSFLPTLPSAQLLLVAAAVGAVLLFSRLYPLGFFLLGLAWACTSAQWALDDRLAPELDGRTLWLEG
RVVGLPEVGEGVVRFQLEGATSRRATLPQRIRLAWYGGPQLHAGERWRLAVNLKHPQGLVNPQGFDYEAWLLAQRIGATG
TIKAGRRLSPAQGLSSWRDALRQRLLAMPAMGREGGLAALVLGDGSGLSTADWRLLQHTGTVHLMVISGQHIALLAGFLY
ALVAGLARLGWWPRRLPWLPCACLLALAGALFYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGAGWPLLIALLLVLILE
PLATLQPGFWLSFAAVALLALVFGGRLGRWGWWQGLTRAQWTMAVGLLPMMLALGLPVSISGPLANLLAVPWVSLLVVPL
ALLGTLLLPIPVVGSGLLWLAGATLHLLFVMLGWIAAWLPAWLPSSLPWWAWSMALLGALLMLLPAGIPLRLPGIALLLP
ALLLPVDKPAPGRAEVWLFDVGQGLSVLVRTREHRLLYDAGPRFGDFDIGERVVLPSLRALNVSRLDLLLLSHADSDHAG
GAEAILAGLPVARLLSGEPLRRPLPRPAESCQSGEHWQWDGVRFATWQWAQGETGNQRSCVLLIEAQGERLLLTGDIDAA
AESALLASDLSRPVHWLLAPHHGSRSSSSQALVEGLAPRHALIVRGRHNHFGHPHPQVLARYRQIGAQVHDTALSGALRL
TLGEHDGVRGEREKRRFWRGK

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=805198 PVE35_RS14200 WP_277372171.1 3098988..3101213(-) (comA) [Pseudomonas sp. AA-38]
ATGCGTGCAGGGATGCTGGCGTTGGCTGCTGGATTGCTGGCCTTGTCCTTTCTACCGACCTTGCCGTCGGCGCAACTGCT
GCTGGTGGCGGCCGCTGTCGGCGCTGTGCTGCTGTTTTCCCGCCTTTATCCATTGGGTTTCTTCCTGCTAGGCCTGGCCT
GGGCCTGCACCTCGGCGCAATGGGCCCTGGATGACCGCCTGGCACCCGAGCTCGATGGCCGTACCCTGTGGCTCGAAGGG
CGGGTGGTCGGGCTGCCGGAGGTGGGCGAGGGCGTGGTGCGCTTCCAGCTCGAAGGGGCCACATCCCGACGCGCAACATT
GCCTCAGCGCATACGCCTGGCCTGGTATGGCGGGCCGCAACTGCATGCCGGTGAGCGTTGGCGCCTGGCGGTGAATCTCA
AGCATCCGCAGGGGCTGGTCAACCCGCAGGGCTTCGATTACGAAGCCTGGTTGCTGGCCCAGCGTATCGGTGCCACCGGA
ACCATCAAGGCCGGGCGACGCCTGAGCCCGGCGCAGGGCCTGAGCAGTTGGCGTGATGCTCTGCGCCAGAGGTTGCTGGC
CATGCCGGCAATGGGCCGCGAGGGTGGCCTGGCGGCGCTGGTGCTGGGCGATGGCTCCGGGCTCAGCACGGCGGACTGGC
GCCTCTTGCAGCACACCGGCACGGTGCACCTGATGGTCATTTCCGGGCAGCACATCGCCTTGCTGGCCGGTTTCCTGTAT
GCCCTGGTGGCCGGCCTGGCGCGCCTGGGCTGGTGGCCCAGGCGCCTGCCCTGGCTGCCTTGCGCCTGTCTGCTGGCGCT
GGCCGGCGCCTTGTTCTATGGACTGCTGGCGGGGTTTGAGGTGCCGGTCAGGCGCGCCTGCGTGATGGTGGCTATGGTGC
TGCTATGGCGTCTGCGTTTTCGTCATCTGGGAGCGGGTTGGCCGCTGCTGATCGCCTTGTTGCTGGTGCTGATCCTCGAA
CCCCTGGCGACGTTACAGCCGGGTTTCTGGTTGTCGTTCGCGGCGGTGGCGCTGCTGGCGTTGGTGTTCGGCGGTCGCCT
TGGGCGCTGGGGCTGGTGGCAGGGCCTGACGCGCGCGCAATGGACCATGGCCGTCGGCCTGCTGCCGATGATGCTGGCGC
TGGGGCTGCCGGTGAGCATCAGCGGGCCGCTGGCCAATCTGCTCGCGGTGCCCTGGGTGAGCCTGCTGGTGGTGCCTCTG
GCGTTGCTTGGCACCTTGCTGTTACCAATCCCCGTCGTGGGCAGCGGGCTGCTGTGGTTGGCCGGGGCTACGCTGCACCT
GCTGTTCGTCATGCTTGGCTGGATCGCCGCCTGGTTGCCGGCCTGGCTGCCCAGCAGCCTGCCCTGGTGGGCCTGGAGCA
TGGCACTGCTCGGGGCGCTGTTGATGCTCCTACCGGCGGGGATTCCCCTGCGTTTGCCGGGTATCGCATTGCTCCTGCCG
GCGTTGCTGTTGCCAGTGGACAAGCCGGCCCCTGGGCGGGCGGAGGTCTGGTTGTTCGATGTCGGCCAGGGCCTTTCTGT
ACTGGTGCGCACCCGTGAGCACCGCCTGCTTTACGATGCCGGGCCTCGTTTCGGTGATTTCGATATCGGCGAGCGGGTGG
TGCTGCCCTCGTTGCGCGCACTCAATGTCTCGCGTCTCGATCTGCTGCTGCTCAGTCATGCCGACAGCGATCATGCCGGT
GGCGCCGAGGCGATCCTGGCCGGCCTGCCAGTGGCGCGCCTGCTCAGTGGCGAGCCCCTGCGCCGCCCGCTGCCCAGGCC
GGCCGAGTCCTGCCAGAGTGGTGAGCACTGGCAATGGGACGGCGTGCGCTTCGCGACCTGGCAGTGGGCGCAGGGCGAGA
CGGGCAACCAGCGTTCATGCGTGCTGTTGATCGAGGCGCAGGGGGAGCGTCTGCTGCTGACCGGCGATATCGACGCAGCC
GCCGAGTCGGCGCTGCTGGCCAGTGACCTGTCGCGCCCGGTGCACTGGCTGCTGGCGCCACACCATGGCAGTCGCAGCTC
ATCGAGCCAGGCTCTGGTCGAAGGTCTGGCTCCACGACATGCCTTGATCGTGCGTGGGCGCCACAATCATTTCGGCCACC
CGCACCCTCAGGTGCTGGCGCGCTACCGACAGATTGGCGCACAGGTGCACGACACGGCCCTCAGCGGCGCCTTGCGCTTG
ACCCTGGGCGAGCACGACGGGGTACGCGGCGAGCGGGAAAAGCGTCGCTTCTGGCGGGGAAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(200-463)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-684)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

65.694

97.166

0.638
  comA Ralstonia pseudosolanacearum GMI1000

37.032

100

0.387