Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3T97_RS13825 Genome accession   NZ_CP120185
Coordinates   2799412..2799939 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain Dog013     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2794412..2804939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T97_RS13800 (P3T97_13800) - 2795113..2795910 (+) 798 WP_239705813.1 hypothetical protein -
  P3T97_RS13805 (P3T97_13805) - 2796010..2796855 (-) 846 WP_239705812.1 DUF2785 domain-containing protein -
  P3T97_RS13810 (P3T97_13810) - 2796896..2797444 (-) 549 WP_239705811.1 nucleotidyltransferase family protein -
  P3T97_RS13815 (P3T97_13815) - 2797947..2798903 (+) 957 WP_275584085.1 Abi family protein -
  P3T97_RS13820 (P3T97_13820) rpsR 2799110..2799352 (-) 243 WP_037589451.1 30S ribosomal protein S18 -
  P3T97_RS13825 (P3T97_13825) ssbA 2799412..2799939 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene
  P3T97_RS13830 (P3T97_13830) rpsF 2799967..2800260 (-) 294 WP_025906202.1 30S ribosomal protein S6 -
  P3T97_RS13835 (P3T97_13835) - 2800431..2800667 (-) 237 WP_204258867.1 hypothetical protein -
  P3T97_RS13840 (P3T97_13840) - 2800681..2800899 (-) 219 WP_204258868.1 DUF5780 domain-containing protein -
  P3T97_RS13845 (P3T97_13845) - 2801356..2801898 (+) 543 WP_239705809.1 hypothetical protein -
  P3T97_RS13850 (P3T97_13850) - 2802130..2802414 (-) 285 WP_323714404.1 recombinase family protein -
  P3T97_RS13855 (P3T97_13855) - 2802731..2803549 (-) 819 WP_204258870.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=804367 P3T97_RS13825 WP_025906200.1 2799412..2799939(-) (ssbA) [Mammaliicoccus sciuri strain Dog013]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=804367 P3T97_RS13825 WP_025906200.1 2799412..2799939(-) (ssbA) [Mammaliicoccus sciuri strain Dog013]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAATCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537