Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RJD14_RS16925 Genome accession   NZ_CP134493
Coordinates   3705356..3706765 (-) Length   469 a.a.
NCBI ID   WP_261683816.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.1456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3700356..3711765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS16905 (RJD14_16905) - 3701673..3702329 (+) 657 WP_311127084.1 response regulator transcription factor -
  RJD14_RS16910 (RJD14_16910) - 3702342..3702983 (-) 642 WP_311127085.1 phosphatase PAP2 family protein -
  RJD14_RS16915 (RJD14_16915) - 3703159..3704049 (+) 891 WP_311127086.1 hypothetical protein -
  RJD14_RS16920 (RJD14_16920) disA 3704151..3705275 (-) 1125 WP_184594841.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  RJD14_RS16925 (RJD14_16925) radA 3705356..3706765 (-) 1410 WP_261683816.1 DNA repair protein RadA Machinery gene
  RJD14_RS16930 (RJD14_16930) - 3706960..3708666 (+) 1707 WP_311127087.1 BACON domain-containing protein -
  RJD14_RS16935 (RJD14_16935) - 3708698..3709498 (-) 801 WP_311127088.1 hypothetical protein -
  RJD14_RS16940 (RJD14_16940) - 3709570..3710502 (+) 933 WP_311127089.1 Ppx/GppA phosphatase family protein -
  RJD14_RS16945 (RJD14_16945) - 3710600..3711424 (+) 825 WP_184594851.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49735.91 Da        Isoelectric Point: 8.4920

>NTDB_id=804193 RJD14_RS16925 WP_261683816.1 3705356..3706765(-) (radA) [Streptomyces sp. CGMCC 4.1456]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTSALPIGQVDGRRATARTTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPAGMKVVEVSDIGDALRVLPRSRRREAPRDEEGRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=804193 RJD14_RS16925 WP_261683816.1 3705356..3706765(-) (radA) [Streptomyces sp. CGMCC 4.1456]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGCCCGTCCTACCGCTGCACGGAGTGCGGGTGGCAGACGGCGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCACGCCCGCGGTCCGTACGACGGCACCGGGCA
GGGTCACCACCTCCGCCCTGCCCATCGGCCAGGTGGACGGCCGCCGGGCGACGGCCCGCACCACCGGCGTGCCCGAGCTG
GACCGCGTGCTCGGCGGCGGCCTGGTCCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCGACGCT
CCTGCTCGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTGTACGTCACGGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCATCTGTACCTGGCCGCCGAGACGGATCTGGCGGCGGTGCTG
GGCCACTTGGACGCGGTGAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
GCCGGGCGGTATGGCCCAGGTGCGGGAGGTCGCCGGGGCCCTGATCCGGGCGTCGAAGGAACGCGGCATGTCCACGCTGC
TCGTCGGCCATGTCACCAAGGACGGCGCCATCGCGGGCCCGCGCCTGCTGGAACACCTCGTGGACGTGGTGCTGCACTTC
GAGGGCGACCGGCACGCCCGCCTCCGGCTCGTGCGAGGCGTCAAGAACCGCTACGGCACCACCGACGAGGTCGGCTGCTT
CGAATTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGACTTTTCCTGACACGTCGGGCCGAACCGGTCCCGG
GCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCCCCCCGCCGCACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCGGTGCTGGAACAGCGTGGCCG
GATCAGCGCCTTGGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGCGTGAAGCTCTCGGAGCCCGCGGCGGATCTGG
CCGTCGCCCTCGCCCTGGCGAGCGCGGCGAGTGACACACCTCTCCCCAAGAACCTGGTCGCGATCGGGGAAGTCGGCCTG
GCGGGCGAGGTGAGACGGGTCACGGGCGTGCAGCGCAGGCTGGCGGAAGCCCACCGGCTGGGCTTCACACACGCCCTGGT
ACCGGGCGACCCGGGCAAGATCCCCGCGGGTATGAAGGTTGTGGAAGTCTCGGACATAGGGGACGCGCTGCGGGTCCTTC
CGCGCTCCCGTCGCAGAGAGGCCCCACGGGACGAGGAGGGTCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.142

96.375

0.416
  radA Streptococcus mitis NCTC 12261

43.142

96.375

0.416
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.699

96.375

0.412