Detailed information    

insolico Bioinformatically predicted

Overview

Name   disA   Type   Machinery gene
Locus tag   RJD14_RS16920 Genome accession   NZ_CP134493
Coordinates   3704151..3705275 (-) Length   374 a.a.
NCBI ID   WP_184594841.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.1456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3699151..3710275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS16900 (RJD14_16900) - 3700096..3701676 (+) 1581 WP_311127083.1 histidine kinase -
  RJD14_RS16905 (RJD14_16905) - 3701673..3702329 (+) 657 WP_311127084.1 response regulator transcription factor -
  RJD14_RS16910 (RJD14_16910) - 3702342..3702983 (-) 642 WP_311127085.1 phosphatase PAP2 family protein -
  RJD14_RS16915 (RJD14_16915) - 3703159..3704049 (+) 891 WP_311127086.1 hypothetical protein -
  RJD14_RS16920 (RJD14_16920) disA 3704151..3705275 (-) 1125 WP_184594841.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  RJD14_RS16925 (RJD14_16925) radA 3705356..3706765 (-) 1410 WP_261683816.1 DNA repair protein RadA Machinery gene
  RJD14_RS16930 (RJD14_16930) - 3706960..3708666 (+) 1707 WP_311127087.1 BACON domain-containing protein -
  RJD14_RS16935 (RJD14_16935) - 3708698..3709498 (-) 801 WP_311127088.1 hypothetical protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 39972.72 Da        Isoelectric Point: 4.9201

>NTDB_id=804192 RJD14_RS16920 WP_184594841.1 3704151..3705275(-) (disA) [Streptomyces sp. CGMCC 4.1456]
MAANDRAAAPGKSGGSAGTDGLMRASLSAVAPGTALRDGLERVLRGNTGGLIVLGSDKTVEALCSGGFVLDVEFTATRLR
ELCKLDGGIVLSSDLSKILRAGVQLVPDPAIPTEETGTRHRTADRVSRQVGFPVVSVSQSMRLIALYVDGQRRVLEDSAA
ILSRANQALATLERYKLRLDEVAGTLSALEIEDLVTVRDVSAVAQRLEMVRRIATEIAEYVVELGTDGRLLALQLDELIA
GVEPERELVVRDYVPEPTAKRSRTVDEALAELDALTHAELLELPIVARALGYTGSPETLDSAVSPRGFRLLAKVPRLPGA
IIDRLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=804192 RJD14_RS16920 WP_184594841.1 3704151..3705275(-) (disA) [Streptomyces sp. CGMCC 4.1456]
GTGGCAGCCAACGACCGGGCAGCAGCTCCCGGAAAATCCGGTGGGAGTGCCGGTACCGATGGCCTGATGCGCGCTTCACT
GAGCGCCGTGGCACCCGGAACCGCCCTGCGTGACGGCCTGGAGCGCGTGCTCCGGGGCAACACCGGCGGTCTCATCGTGC
TGGGCTCCGACAAGACGGTCGAGGCGCTGTGCAGCGGCGGTTTCGTGCTGGACGTCGAGTTCACCGCGACCCGTCTGCGC
GAGCTCTGCAAGCTGGACGGCGGCATCGTGCTGTCCTCGGACCTGTCGAAGATCCTGCGCGCGGGCGTGCAGCTGGTCCC
GGACCCGGCGATCCCCACGGAGGAAACCGGCACCCGGCACCGCACCGCGGACCGCGTCAGCAGGCAGGTCGGCTTCCCGG
TGGTCTCGGTCTCCCAGTCGATGCGGCTGATCGCCCTGTACGTCGACGGCCAGCGCCGCGTCCTGGAGGACTCGGCGGCG
ATCCTGTCCCGCGCCAACCAGGCCCTCGCCACCCTGGAGCGCTACAAGCTCCGCCTCGACGAGGTCGCGGGCACGCTGTC
GGCGCTGGAGATCGAGGACCTGGTGACCGTCCGGGACGTCTCGGCGGTCGCCCAGCGCCTGGAGATGGTGCGCCGCATCG
CCACGGAGATCGCCGAGTACGTGGTGGAGCTGGGCACGGACGGGCGCCTGCTGGCCCTCCAGCTCGACGAGCTGATCGCC
GGCGTGGAGCCCGAGCGTGAGCTGGTCGTCCGGGACTACGTCCCCGAGCCCACGGCCAAGCGGTCCCGCACGGTCGACGA
GGCCCTGGCCGAGCTCGACGCCCTCACCCACGCCGAGCTGCTCGAACTGCCCATCGTGGCACGGGCGTTGGGCTACACGG
GCTCGCCCGAGACGCTGGACTCGGCGGTGTCCCCGCGCGGCTTCCGCCTCCTCGCCAAGGTGCCCCGGCTCCCCGGCGCG
ATCATCGACCGCCTGGTGGAGCACTTCGGCGGCCTGCAGAAACTGCTCGCCGCGAGCGTCGACGACCTCCAGACGGTGGA
CGGCGTGGGCGAGGCCCGGGCGCGCAGCGTGCGGGAGGGCCTGTCGCGGCTGGCGGAGTCGTCGATCCTGGAGCGGTACG
TCTAG

Domains

Predicted by InterProScan.

DisA bacterial checkpoint controller linker region (DisA-linker)

(155-297)

DisA bacterial checkpoint controller nucleotide-binding (DAC)

(38-151)

Helix-hairpin-helix motif (HHH_2)

(324-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

45.429

96.524

0.438