Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   OO855_RS16885 Genome accession   NZ_AP026110
Coordinates   3367208..3367945 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CEC08123     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3362208..3372945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO855_RS16870 (CEC08123_32380) clpC 3362662..3365235 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  OO855_RS16875 (CEC08123_32390) yfiH 3365365..3366096 (-) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  OO855_RS16880 (CEC08123_32400) rluD 3366093..3367073 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OO855_RS16885 (CEC08123_32410) comL 3367208..3367945 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  OO855_RS16890 (CEC08123_32420) raiA 3368216..3368557 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  OO855_RS16895 pheL 3368661..3368708 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  OO855_RS16900 (CEC08123_32430) pheA 3368807..3369967 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  OO855_RS16905 (CEC08123_32440) tyrA 3370010..3371131 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  OO855_RS16910 (CEC08123_32450) aroF 3371142..3372212 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  OO855_RS16915 (CEC08123_32460) yfiL 3372422..3372787 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=80417 OO855_RS16885 WP_000197686.1 3367208..3367945(+) (comL) [Escherichia coli strain CEC08123]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=80417 OO855_RS16885 WP_000197686.1 3367208..3367945(+) (comL) [Escherichia coli strain CEC08123]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment