Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RJD14_RS02275 Genome accession   NZ_CP134493
Coordinates   497790..498431 (-) Length   213 a.a.
NCBI ID   WP_311124916.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.1456     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 492790..503431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS02245 (RJD14_02245) - 493193..493699 (+) 507 WP_184599740.1 HNH endonuclease -
  RJD14_RS02250 (RJD14_02250) - 493758..494717 (-) 960 WP_193480843.1 SPFH domain-containing protein -
  RJD14_RS02255 (RJD14_02255) - 494849..495280 (-) 432 WP_311124915.1 NfeD family protein -
  RJD14_RS02260 (RJD14_02260) - 495377..496174 (-) 798 WP_193480841.1 ABC transporter ATP-binding protein -
  RJD14_RS02265 (RJD14_02265) - 496335..497123 (+) 789 WP_189730197.1 hypothetical protein -
  RJD14_RS02270 (RJD14_02270) - 497391..497633 (-) 243 WP_114251215.1 chaplin -
  RJD14_RS02275 (RJD14_02275) vraR 497790..498431 (-) 642 WP_311124916.1 response regulator transcription factor Regulator
  RJD14_RS02280 (RJD14_02280) - 498424..499569 (-) 1146 WP_311124917.1 GAF domain-containing sensor histidine kinase -
  RJD14_RS02285 (RJD14_02285) - 499805..500503 (+) 699 WP_311124918.1 SDR family oxidoreductase -
  RJD14_RS02290 (RJD14_02290) - 500500..501618 (+) 1119 WP_311124919.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  RJD14_RS02295 (RJD14_02295) - 501898..502626 (+) 729 WP_193480836.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23012.22 Da        Isoelectric Point: 4.8810

>NTDB_id=804157 RJD14_RS02275 WP_311124916.1 497790..498431(-) (vraR) [Streptomyces sp. CGMCC 4.1456]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVDRAEELKPDVILMDVKMPGMDGVDALRRLRELDNPAR
VLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVADALLSQEEANSGPGRAGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGVTG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=804157 RJD14_RS02275 WP_311124916.1 497790..498431(-) (vraR) [Streptomyces sp. CGMCC 4.1456]
GTGGCTGACGCGATCAAGGTCCTGCTCGTCGACGACCACCAGGTCGTCCGCCGGGGCCTGCGCACGTTCCTCGAGGTGCA
GGACGACATCGAGGTCGTCGGCGAGGCCGCGGACGGCGCCGAAGGAGTGGACCGTGCGGAGGAGCTGAAGCCCGACGTCA
TCCTCATGGACGTCAAGATGCCGGGCATGGACGGTGTCGACGCCCTGCGCAGACTCCGCGAACTCGACAACCCCGCGCGC
GTACTGGTCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTGCCGGCCCTGCGCGCGGGCGCCGCCGGATACGTCTACAA
GGACGTCGACCCCGACGCCCTCGCCGGAGCCATCCGCTCGGTCCACGCCGGCCACATCCTCCTCCAGCCGGAGGTCGCCG
ACGCCCTGCTGTCCCAGGAGGAGGCCAACTCGGGCCCCGGAAGGGCCGGTTCGCTCACCGAGCGGGAGCGCGAGGTGCTT
GGCCTGATAGCGGACGGCCGCTCCAACCGGGAGATCGCCCGTGCGCTCGTCCTCTCCGAGAAGACCGTCAAGACCCACGT
CTCGAACATCCTGATGAAGCTCGACCTGTCCGACCGAACCCAGGCCGCCCTGTGGGCCGTTCGCCATGGCGTGACCGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

47.642

99.531

0.474
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.39