Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RJD14_RS00620 Genome accession   NZ_CP134493
Coordinates   142218..142841 (+) Length   207 a.a.
NCBI ID   WP_311124697.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.1456     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 137218..147841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS00600 (RJD14_00600) - 138521..139177 (-) 657 WP_193480210.1 vitamin K epoxide reductase family protein -
  RJD14_RS00605 (RJD14_00605) - 139320..140186 (+) 867 WP_311124694.1 ABC transporter ATP-binding protein -
  RJD14_RS00610 (RJD14_00610) - 140183..141028 (+) 846 WP_311124695.1 ABC transporter permease -
  RJD14_RS00615 (RJD14_00615) - 141025..142221 (+) 1197 WP_311124696.1 sensor histidine kinase -
  RJD14_RS00620 (RJD14_00620) vraR 142218..142841 (+) 624 WP_311124697.1 response regulator transcription factor Regulator
  RJD14_RS00625 (RJD14_00625) hisS 143006..144268 (-) 1263 WP_311124698.1 histidine--tRNA ligase -
  RJD14_RS00630 (RJD14_00630) - 144280..144987 (-) 708 WP_184597217.1 MBL fold metallo-hydrolase -
  RJD14_RS00635 (RJD14_00635) - 145156..146001 (+) 846 WP_261679021.1 peptidylprolyl isomerase -
  RJD14_RS00640 (RJD14_00640) - 146137..147366 (+) 1230 WP_311124699.1 DUF349 domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22277.76 Da        Isoelectric Point: 5.4399

>NTDB_id=804154 RJD14_RS00620 WP_311124697.1 142218..142841(+) (vraR) [Streptomyces sp. CGMCC 4.1456]
MIRIVLADDHPVVREGLRAMLSAESDLEVVADASSGPQAEALAAELRPDIVLMDLRMPGGGGVDSIVRMTRAGLPCRVVV
LTTYETDRDILRAVEAGAAGYLLKDLPRAELAEAVRAAARGETVLAPSVAARLVDQLRTKPDRPRLSERETAVLRLVAEG
CTNAEIGRRLFIGESTVKTYLLRIFGKLGVDDRTAAVTSAMRYGLLD

Nucleotide


Download         Length: 624 bp        

>NTDB_id=804154 RJD14_RS00620 WP_311124697.1 142218..142841(+) (vraR) [Streptomyces sp. CGMCC 4.1456]
GTGATCCGGATCGTCCTGGCCGACGACCATCCGGTGGTACGGGAGGGGCTGCGGGCGATGCTCAGTGCCGAGTCCGATCT
GGAGGTCGTCGCCGACGCGTCCAGTGGCCCGCAGGCGGAGGCGCTGGCGGCGGAGTTGCGGCCGGACATCGTGCTGATGG
ATCTGCGGATGCCGGGGGGCGGGGGTGTGGACTCCATCGTGCGGATGACGCGGGCCGGGCTTCCGTGCCGGGTGGTCGTG
CTGACGACGTACGAGACGGACCGGGACATCCTGCGGGCGGTGGAGGCCGGGGCCGCGGGATATCTGCTGAAGGACCTGCC
GCGTGCCGAACTCGCGGAGGCCGTACGGGCGGCGGCACGCGGCGAGACGGTACTGGCACCGTCCGTCGCGGCCCGGCTGG
TGGACCAGCTGCGGACCAAGCCGGACCGGCCCCGGCTGTCGGAACGCGAGACGGCGGTGCTGCGCCTGGTTGCCGAAGGC
TGCACGAACGCGGAGATCGGGCGCCGGTTGTTCATCGGGGAGTCGACGGTGAAGACGTATCTGCTGCGGATCTTCGGCAA
ATTGGGCGTGGACGACCGGACGGCGGCGGTCACGAGCGCGATGCGGTACGGGTTGCTGGACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(146-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.864

99.517

0.377
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.372