Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   RJW53_RS09680 Genome accession   NZ_CP134488
Coordinates   1929718..1930758 (-) Length   346 a.a.
NCBI ID   WP_012775685.1    Uniprot ID   A0A0H3MX50
Organism   Streptococcus suis strain NLS50     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1924718..1935758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW53_RS09650 (RJW53_09650) - 1925374..1925682 (-) 309 WP_002942377.1 YlxQ-related RNA-binding protein -
  RJW53_RS09655 (RJW53_09655) rnpM 1925669..1925965 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  RJW53_RS09660 (RJW53_09660) nusA 1925982..1927124 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  RJW53_RS09665 (RJW53_09665) rimP 1927198..1927668 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  RJW53_RS09670 (RJW53_09670) trmB 1928239..1928877 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RJW53_RS09675 (RJW53_09675) ccrZ 1928874..1929668 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  RJW53_RS09680 (RJW53_09680) pptB 1929718..1930758 (-) 1041 WP_012775685.1 ABC transporter permease Regulator
  RJW53_RS09685 (RJW53_09685) pptA 1930755..1931489 (-) 735 WP_012027751.1 ABC transporter ATP-binding protein Regulator
  RJW53_RS09690 (RJW53_09690) - 1931552..1931965 (+) 414 WP_012027752.1 HIT family protein -
  RJW53_RS09695 (RJW53_09695) - 1931967..1932269 (+) 303 WP_012027753.1 methyl-accepting chemotaxis protein -
  RJW53_RS09700 (RJW53_09700) - 1932378..1933571 (-) 1194 WP_012027754.1 LCP family protein -
  RJW53_RS09705 (RJW53_09705) - 1933568..1934095 (-) 528 WP_012775687.1 GNAT family N-acetyltransferase -
  RJW53_RS09710 (RJW53_09710) tsaE 1934088..1934528 (-) 441 WP_012775330.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40177.55 Da        Isoelectric Point: 10.1278

>NTDB_id=804134 RJW53_RS09680 WP_012775685.1 1929718..1930758(-) (pptB) [Streptococcus suis strain NLS50]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVLVVIAISLLVLLSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVSGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLVVELGFALLFSKENA
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=804134 RJW53_RS09680 WP_012775685.1 1929718..1930758(-) (pptB) [Streptococcus suis strain NLS50]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATATCGTCAATTATTGTTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTGGTGGTTATTGCAATCAGTCTACTGGTGCTATTGTCCGGAAGAATTGCGACTTATTTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TATCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACAACGGT
TAAAGGAATCAGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTCGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTCCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTAGTAGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATGCG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(154-329)

Bacterial ABC transporter protein EcsB (EcsB)

(2-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MX50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

46.023

100

0.468
  pptB Streptococcus thermophilus LMD-9

45.455

100

0.462